Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_K04
(641 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit S... 28 1.3
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom... 28 1.3
SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi... 28 1.3
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 26 4.0
SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 4.0
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 26 5.3
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 25 7.0
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam... 25 7.0
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch... 25 7.0
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|... 25 9.3
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact... 25 9.3
>SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit
S28|Schizosaccharomyces pombe|chr 2|||Manual
Length = 288
Score = 27.9 bits (59), Expect = 1.3
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 412 DKIGASATAAHTDFINRNDYSLDGKLNLFKSPDTSVDFNA-GFKK 543
+KI ASAT DFI N+ +N F S DTS++ N GF++
Sbjct: 119 EKIRASATEETKDFIKLNE------VNEFPSSDTSLESNQDGFER 157
>SPAC22A12.11 |dak1||dihydroxyacetone kinase
Dak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 27.9 bits (59), Expect = 1.3
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +1
Query: 34 RVRRDAHGALTLNSDGTSGAGVKVPFAGNDKNIVSAI-GSLDLTNRQKLGAATAGVALDN 210
R+ RD + N DGTSGA + F G K + + S D+++ K AA VALD
Sbjct: 442 RIVRDIADVIEDNMDGTSGALYAIFFHGFAKGMKDTLEKSKDISS--KTWAAGLKVALDT 499
Query: 211 V 213
+
Sbjct: 500 L 500
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 190 AGVALDNVNGHGVSLTDTHIPG 255
A A+DN+ G SL H+PG
Sbjct: 178 AKAAIDNLVSIGASLAHVHVPG 199
>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
Tim44|Schizosaccharomyces pombe|chr 2|||Manual
Length = 427
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -1
Query: 605 YLESENPKLGSQEDFMKGVSNFLKPALKSTEVSGLLKRF 489
Y ESE+P + S D +S TE S +++RF
Sbjct: 235 YQESEHPIVSSIRDMADSISGVWSRMFSETEASQVMRRF 273
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 26.2 bits (55), Expect = 4.0
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = -1
Query: 566 DFMKGVSNFLKPALKSTEVSGLLKRFSFPSRE*SLRLMKSV*AAVADAPILSLNI 402
DF K N L ++ FSF SRE S R +K + +A+ P L ++I
Sbjct: 576 DFAKVSDNLLFSNFVERWFQSVIGVFSFASRENSNRALKILKSAILYRPHLRMSI 630
>SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 115
Score = 26.2 bits (55), Expect = 4.0
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 535 FKKFDTPFMKSSWEPNFGFSL 597
F+K++T F+KS + N G SL
Sbjct: 38 FEKYETSFLKSLFNGNLGLSL 58
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 25.8 bits (54), Expect = 5.3
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -1
Query: 197 TPAVAAPSFCLLVKSKEPIALTIFLSLPAKG-TLTPAPEVPSELSVRAPCASLRTLELVN 21
TP + APS S ++ + ++ P + T +P+P + S S +P SLR L
Sbjct: 299 TPGIDAPSDLEAKFSDLGVSSVVSVTSPLQSCTNSPSPPLSSPASSASPSESLRNESLGI 358
Query: 20 SSGSS 6
S S
Sbjct: 359 KSAKS 363
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 25.4 bits (53), Expect = 7.0
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = -1
Query: 218 PFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLTPAPEVPSE 72
P T S++ V++ S + T+ ++ PA + TP P PS+
Sbjct: 155 PSTTDSSSTDVSSSDSVSTSASSSNASNTVSVTSPASSSATPLPNQPSQ 203
>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 25.4 bits (53), Expect = 7.0
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -1
Query: 380 VLKLGTLAISGIFLVAKAFAVMSWLSLWKRFTLPAAVTLS 261
++ G+L+I IF+ F + SW++L+ T A TLS
Sbjct: 401 IIVFGSLSI--IFIHIYCFKITSWVNLYGWITCTIARTLS 438
>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 25.4 bits (53), Expect = 7.0
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +1
Query: 451 FINRNDYSLDGKLNLFKSPDTSVD 522
F N Y G N FK PD S+D
Sbjct: 206 FTRENFYQKFGSPNCFKKPDGSID 229
>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 699
Score = 25.0 bits (52), Expect = 9.3
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +1
Query: 379 TVGGGIDYMFKD-KIGASATAAHTDFIN 459
+VG I Y +D K+ TA+H DF+N
Sbjct: 25 SVGRAIRYCKEDGKVEGCETASHVDFLN 52
>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 648
Score = 25.0 bits (52), Expect = 9.3
Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 1/103 (0%)
Frame = +1
Query: 295 FHNDNHDITAKAFATRNMPDIANVPNFNTVGGGIDYMFKDKIGASATAAHTDFINRNDYS 474
++NDN I + N+P+ +V N N I++ F S ++ + + +
Sbjct: 54 YNNDNSKIDNFSNEQMNIPEFISVRNLNDDSSSIEF-FGPASNISFVNQLNHYLRKAERN 112
Query: 475 LDGKLNLFKSPDTSVDFNAGFKKFDTPFM-KSSWEPNFGFSLS 600
L+ ++ T + G +KF M NF FSLS
Sbjct: 113 GYDFLSEGQNDITPEEERKGLEKFGMKLMVLKDNANNFDFSLS 155
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.133 0.391
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,523,503
Number of Sequences: 5004
Number of extensions: 53680
Number of successful extensions: 128
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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