Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_K02
         (561 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74473-2|CAA98949.2|  319|Caenorhabditis elegans Hypothetical pr...    31   0.57 
AF099002-3|AAO91691.1|  570|Caenorhabditis elegans Hypothetical ...    28   4.0  
AF099002-2|AAC68740.2|  556|Caenorhabditis elegans Hypothetical ...    28   4.0  
AF099002-1|AAK68587.1|  559|Caenorhabditis elegans Hypothetical ...    28   4.0  
Z83233-5|CAB05765.2|  340|Caenorhabditis elegans Hypothetical pr...    28   5.3  
AC024790-3|AAF60637.1|  446|Caenorhabditis elegans Hypothetical ...    28   5.3  
U80437-10|AAN84839.1|  656|Caenorhabditis elegans Hypothetical p...    27   7.0  
Z82259-5|CAB05125.2|  353|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z68217-7|CAA92469.2|  301|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>Z74473-2|CAA98949.2|  319|Caenorhabditis elegans Hypothetical
           protein F56H9.1 protein.
          Length = 319

 Score = 31.1 bits (67), Expect = 0.57
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
 Frame = +3

Query: 66  FVSSVVDVKSVIESAAALLLFKKYCNNRVLCIVLKVIMFNILSIGL--FVTIIMNVKAYP 239
           FV SV+            ++   YC+   LCI L +  F +L  G+   V  I N K++ 
Sbjct: 235 FVQSVIQDYVCSMDVVNNMVSHFYCSGDRLCITLSLFSFGVLIYGIDGLVMYIFNYKSFG 294

Query: 240 SIFSGESVENE 272
           S  +     NE
Sbjct: 295 SSVASREPTNE 305


>AF099002-3|AAO91691.1|  570|Caenorhabditis elegans Hypothetical
           protein Y71H10B.1c protein.
          Length = 570

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 471 WDIGYHFGVSSDGTVYEGRGWSTFRRTMRC 560
           + +G H G   +G VY G     F++ M+C
Sbjct: 295 YKLGIHTGPLREGVVYSGGSCDAFQKMMKC 324


>AF099002-2|AAC68740.2|  556|Caenorhabditis elegans Hypothetical
           protein Y71H10B.1a protein.
          Length = 556

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 471 WDIGYHFGVSSDGTVYEGRGWSTFRRTMRC 560
           + +G H G   +G VY G     F++ M+C
Sbjct: 281 YKLGIHTGPLREGVVYSGGSCDAFQKMMKC 310


>AF099002-1|AAK68587.1|  559|Caenorhabditis elegans Hypothetical
           protein Y71H10B.1b protein.
          Length = 559

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 471 WDIGYHFGVSSDGTVYEGRGWSTFRRTMRC 560
           + +G H G   +G VY G     F++ M+C
Sbjct: 284 YKLGIHTGPLREGVVYSGGSCDAFQKMMKC 313


>Z83233-5|CAB05765.2|  340|Caenorhabditis elegans Hypothetical
           protein K06B4.5 protein.
          Length = 340

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +2

Query: 44  YKSNKNNIRFECR*CQKCYRVSSCP 118
           Y+S+KNN+ ++CR   +C++  + P
Sbjct: 20  YRSSKNNLIYKCRNINQCFQNYNSP 44


>AC024790-3|AAF60637.1|  446|Caenorhabditis elegans Hypothetical
           protein Y47D7A.6 protein.
          Length = 446

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 523 PSYTVPSLLTPKWYPIS 473
           PSY+VPS   PK YP++
Sbjct: 344 PSYSVPSYTAPKKYPVA 360


>U80437-10|AAN84839.1|  656|Caenorhabditis elegans Hypothetical
           protein C43E11.11 protein.
          Length = 656

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -1

Query: 366 HTVLEFSEARSGLVASHSTANDSRKESHMTELHFPLI 256
           HT LE     +GLV+S++++  SR + H  + H+P I
Sbjct: 613 HTELEVLAFLNGLVSSYNSSVISRGQQHYVD-HYPRI 648


>Z82259-5|CAB05125.2|  353|Caenorhabditis elegans Hypothetical
           protein C28D4.5 protein.
          Length = 353

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 485 VSNIPPLMTVHMEVLHTPHGF 423
           V N PPL++ H ++LH  HGF
Sbjct: 103 VLNFPPLLS-HNDILHQYHGF 122


>Z68217-7|CAA92469.2|  301|Caenorhabditis elegans Hypothetical
           protein F58G6.2 protein.
          Length = 301

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
 Frame = +3

Query: 39  GYINLIKTIFVSSVVDVKSVIESAAALLLFKKYCNNRVLCIVLKVIMFNILS--IGLFVT 212
           GY+     I +SS+V  K   +   A L+        V   +     F +LS    LF+ 
Sbjct: 117 GYVPPFYEIHISSLVLEKIAEQGDTAFLIVT------VRLTIEDTNTFQLLSQICTLFIL 170

Query: 213 IIMNVKAYPSIFSGESVENEVPSYDFPFVSRSQWSARQPNQTLPLKTPVPYVVIH 377
           I+M +     I     ++ ++ +  F   S ++ S  Q N TL L+  +P+V IH
Sbjct: 171 IVMFISIIIVILCYTFIQKQMKTR-FSASSITKKSQEQLNMTLLLQFILPFVTIH 224


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,912,054
Number of Sequences: 27780
Number of extensions: 302584
Number of successful extensions: 863
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)