Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_K01
         (398 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817           28   3.1  
03_01_0483 + 3689155-3689814                                           27   5.5  
01_06_0926 + 33075575-33076618                                         27   5.5  
06_03_1130 - 27826384-27827039,27827800-27828031,27828120-278284...    27   7.2  
11_06_0094 - 20007535-20007658,20007759-20008367,20009021-200090...    26   9.5  
06_03_1379 - 29709532-29709843,29709951-29710112,29710193-297110...    26   9.5  

>08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817
          Length = 958

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 127 LP*QSQVSITPLALKKQTQISQSDLSFHPGR 219
           LP  +Q+  T  ++   +Q+ QSD S HP R
Sbjct: 570 LPGATQLQNTTSSVPLNSQVQQSDFSLHPNR 600


>03_01_0483 + 3689155-3689814
          Length = 219

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -3

Query: 159 GSYADLGLSGQH*DIHSGGITPPPLRGDFGVKQSLCS 49
           GS A  G+ G    + SGG      RGD GV   +CS
Sbjct: 135 GSDAACGVCGGADPVRSGGSGSVAARGDGGVADPVCS 171


>01_06_0926 + 33075575-33076618
          Length = 347

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -3

Query: 159 GSYADLGLSGQH*DIHSGGITPPPLRGDFGVKQSLCS 49
           GS A  G+ G    + SGG      RGD GV   +CS
Sbjct: 116 GSDAACGVCGGADPVRSGGSGSVAARGDGGVADPVCS 152


>06_03_1130 -
           27826384-27827039,27827800-27828031,27828120-27828491,
           27829243-27829449,27829611-27829704,27829806-27829870,
           27829946-27830398,27830467-27830760,27830837-27831295,
           27831367-27831588,27831755-27831968,27832039-27832494,
           27833280-27833389,27833468-27833644,27833758-27833979,
           27834048-27834167,27834274-27834383,27834552-27834607,
           27835252-27835440,27835602-27835775,27836066-27836281,
           27837066-27837106,27837971-27837986,27838330-27838415,
           27838737-27838910,27839093-27839149,27839720-27840064,
           27840175-27840216,27840377-27840496,27840575-27840724,
           27840830-27841534,27841609-27841954,27842978-27843080,
           27844817-27844860,27845905-27846101,27846322-27846344,
           27846802-27847122,27847406-27847579,27847843-27848047,
           27848817-27848880,27850097-27850278,27850291-27850350,
           27850688-27850748,27851249-27851313,27851491-27851569,
           27851656-27852021,27852442-27852790,27852887-27852989,
           27853103-27853373,27854296-27854405,27854515-27854652
          Length = 3364

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 192 VGLELSSWTVA*R*SYPLRKHISKSIFLLYP 284
           VG++   WT A R SY LR  +++    +YP
Sbjct: 445 VGMDGGQWTPASRQSYNLRDAVARYTLQVYP 475


>11_06_0094 -
           20007535-20007658,20007759-20008367,20009021-20009094,
           20009187-20009837
          Length = 485

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 88  GGRCYTPAMYVLMLP*QSQVSITPLALKKQTQISQSDLSFH 210
           G RC     +++ L   S+ SI P A++   +IS S LS H
Sbjct: 87  GVRCSDRTGHIVKLNLGSRESINPFAMRLFGEISHSLLSLH 127


>06_03_1379 -
           29709532-29709843,29709951-29710112,29710193-29711086,
           29712741-29712812,29714106-29714210,29714820-29714900
          Length = 541

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/37 (27%), Positives = 24/37 (64%)
 Frame = +1

Query: 148 SITPLALKKQTQISQSDLSFHPGRLPKDNHILCGNIF 258
           ++ P+ L   +++ ++ L+FH   L +DN+ + G++F
Sbjct: 320 TMIPIMLHGCSKLQKATLNFHQTWLEEDNNKVLGHVF 356


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,890,472
Number of Sequences: 37544
Number of extensions: 166839
Number of successful extensions: 275
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)