Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_J24
(396 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 27 1.1
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 26 1.8
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 26 2.4
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch... 26 2.4
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 25 3.2
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 25 3.2
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 4.3
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 4.3
SPBC4F6.15c |swi10|rad23|DNA repair endonuclease|Schizosaccharom... 25 5.6
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 24 7.4
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1... 24 9.8
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 24 9.8
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 24 9.8
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 27.1 bits (57), Expect = 1.1
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -2
Query: 134 SPLHASSPGLPPAH 93
SPLHA+S LPP+H
Sbjct: 43 SPLHANSVSLPPSH 56
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 26.2 bits (55), Expect = 1.8
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -2
Query: 170 VLPTSYMRGPPESPLHASSPGLPPAHSCSLVITSASPP 57
+ P++Y+R +S + A P PP + +S++PP
Sbjct: 188 IFPSNYVRLLEDSAVKAQPPPPPPQQNYPPAASSSAPP 225
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.8 bits (54), Expect = 2.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 304 CSHYFRLLLYFLSMVCTRKRSY 239
CS LL+ FL+MVC+ K Y
Sbjct: 872 CSDVLYLLMEFLNMVCSPKSYY 893
>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 815
Score = 25.8 bits (54), Expect = 2.4
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -3
Query: 262 VCTRKRSYIRRGCSLCRNISVRN*QIQPLRKC 167
V TR+R + R C +CR ++ ++P + C
Sbjct: 20 VATRRRR-VTRACDMCRRKKIKCDGLRPCKNC 50
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
transporter Bfr1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1530
Score = 25.4 bits (53), Expect = 3.2
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = -1
Query: 285 YYCTSYPWYVLVNVRIYAGDVPCAAIFRSVTDRSNHYESVTHFIHEGSTG 136
+YC + W +N Y G + A +F+S+ S Y+ + + S G
Sbjct: 524 WYCLARSWERYINDPAYIGSMAFAFLFQSLIIGSIFYDMKLNTVDVFSRG 573
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 25.4 bits (53), Expect = 3.2
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 184 GSVSYGPKYCGTRNIPGVYTNVYEYIPWIRSTII 285
G+VS YC + PG + V+ IP+ S+ +
Sbjct: 1072 GNVSLTVGYCSAEHGPGSTSKVFSRIPYSASSTV 1105
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.0 bits (52), Expect = 4.3
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = -2
Query: 200 P*LTDPTITKVLPTSYMRGPPESPLHASSPG--LPPAHSCSLVITSASPP 57
P + + + ++P S + PP S A++P LPP+ S + S +PP
Sbjct: 1487 PAVPNVPVPSMIP-SVAQQPPSSVAPATAPSSTLPPSQSSFAHVPSPAPP 1535
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.0 bits (52), Expect = 4.3
Identities = 20/58 (34%), Positives = 24/58 (41%)
Frame = -2
Query: 239 YTPGMFLVPQYFGP*LTDPTITKVLPTSYMRGPPESPLHASSPGLPPAHSCSLVITSA 66
Y P VP P P++T LP R PP S P PP S +L +SA
Sbjct: 1033 YEPPTVSVPS---PSALSPSVTPQLPPVSSRLPPVSATRPQIPQPPPV-STALPSSSA 1086
>SPBC4F6.15c |swi10|rad23|DNA repair
endonuclease|Schizosaccharomyces pombe|chr 2|||Manual
Length = 252
Score = 24.6 bits (51), Expect = 5.6
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +3
Query: 186 ICQLRTEILRHKEHPRRIYERLRVHTMDKKYN 281
IC L + H HP IY R+ + K YN
Sbjct: 78 ICSLFLSLKYHHLHPEYIYS--RISKLGKSYN 107
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 24.2 bits (50), Expect = 7.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 179 ITKVLPTSYMRGPPESPLHASSPGLPPAHS 90
I +V+ + + PP +PL +P LP A S
Sbjct: 794 IKEVIDGNPFKAPPPAPLPPPAPPLPTAMS 823
>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 23.8 bits (49), Expect = 9.8
Identities = 19/71 (26%), Positives = 29/71 (40%)
Frame = +1
Query: 37 AAQRTLRGGEALVITKEQLCAGGKPGEDACRGDSGGPLMYEVGNTFVMVGSVSYGPKYCG 216
A +R L G E + A P +D RG G L +E FV+ G
Sbjct: 341 ALERFLEGDELQAV--RSTFADMYPLDDTPRGKEGIKLAFEKPEDFVLKPQREGGGNNTY 398
Query: 217 TRNIPGVYTNV 249
++IPG+ + +
Sbjct: 399 GKDIPGLLSKM 409
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 23.8 bits (49), Expect = 9.8
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2
Query: 80 LRSNCVRVVNPVKT 121
+R+NC R + PVKT
Sbjct: 529 VRANCSRTIEPVKT 542
>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 971
Score = 23.8 bits (49), Expect = 9.8
Identities = 6/18 (33%), Positives = 14/18 (77%)
Frame = -1
Query: 300 LIILGYYCTSYPWYVLVN 247
+ ++GY ++ PW++LV+
Sbjct: 132 IFMIGYLISNAPWFILVS 149
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,580,024
Number of Sequences: 5004
Number of extensions: 33017
Number of successful extensions: 113
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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