Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_J22
(366 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC24B10.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 33 0.018
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 29 0.17
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 28 0.52
SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomy... 27 0.69
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 27 0.91
SPBC17D11.03c |||conserved fungal protein|Schizosaccharomyces po... 26 1.6
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 25 2.8
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc... 25 2.8
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c... 25 3.7
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 25 4.9
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom... 24 6.4
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 24 8.5
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 24 8.5
>SPCC24B10.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 156
Score = 32.7 bits (71), Expect = 0.018
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +3
Query: 6 MFGKIVFLLLVALCVGVQSLYLIVSEPVYYIQHYEEPELLTSSRV 140
MFGK+ LL+ A + +Q + + P+ ++H E ELL ++RV
Sbjct: 1 MFGKVSSLLVFASFLIIQGAFATLVAPIGDLEHLSEIELLYTNRV 45
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 29.5 bits (63), Expect = 0.17
Identities = 21/68 (30%), Positives = 31/68 (45%)
Frame = -3
Query: 319 PYT*SSATPAIAAHSFCLIVKYKEPIAHTIFSSLPAKGTSTPAPEVQSELSVRAPSASPR 140
P + S+TP +A+S P+ ++ S+ +STP V S S A S S
Sbjct: 283 PSSTPSSTPLSSANSTTATSASSTPLT-SVNSTTTTSASSTPLSSVSSANSTTATSTSST 341
Query: 139 TLELVNSS 116
L VNS+
Sbjct: 342 PLSSVNST 349
Score = 27.9 bits (59), Expect = 0.52
Identities = 23/83 (27%), Positives = 36/83 (43%)
Frame = -3
Query: 364 SPNPGKSVSVRLNPWPYT*SSATPAIAAHSFCLIVKYKEPIAHTIFSSLPAKGTSTPAPE 185
S P + N T +S+TP + +S P++ ++ S+ TST +
Sbjct: 284 SSTPSSTPLSSANSTTATSASSTPLTSVNSTTTTSASSTPLS-SVSSANSTTATSTSSTP 342
Query: 184 VQSELSVRAPSASPRTLELVNSS 116
+ S S A SAS L VNS+
Sbjct: 343 LSSVNSTTATSASSTPLTSVNST 365
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 27.9 bits (59), Expect = 0.52
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -3
Query: 247 PIAHTIFS-SLPAKGTSTPAPEVQSELSVRAPSASP 143
P +IFS + P+ ++ P+P V S S AP+ +P
Sbjct: 464 PPVSSIFSFNAPSAASTKPSPAVSSTFSFNAPTTTP 499
Score = 25.0 bits (52), Expect = 3.7
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -3
Query: 232 IFS-SLPAKGTSTPAPEVQSELSVRAPSAS 146
+FS P+ T P+P V S S APSA+
Sbjct: 449 VFSFKAPSATTDKPSPPVSSIFSFNAPSAA 478
>SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 194
Score = 27.5 bits (58), Expect = 0.69
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +1
Query: 7 CSGRSSFYCLSLCASAYK 60
C G SSFYCLS+ YK
Sbjct: 132 CQGYSSFYCLSIFDRYYK 149
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 27.1 bits (57), Expect = 0.91
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3
Query: 244 IAHTIFSSLPAKGTSTPAPEVQSE 173
+A + +SLPA GT+TP+P V +
Sbjct: 718 VASSNATSLPAAGTATPSPVVSQQ 741
>SPBC17D11.03c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 213
Score = 26.2 bits (55), Expect = 1.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 288 IAGVALDYVYGHGLSLTDTLFP 353
+A +ALDY YG LS + + P
Sbjct: 130 LANIALDYAYGKVLSFNEVVSP 151
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 25.4 bits (53), Expect = 2.8
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -3
Query: 232 IFSSLPAKGTSTPAPEVQSELSVRAPSASPRTLELVNSS 116
IFSSLP +V ++LS+R P R + +NS+
Sbjct: 1110 IFSSLPVIVMGVYDQDVNADLSLRIPQLYKRGILQLNSA 1148
>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 919
Score = 25.4 bits (53), Expect = 2.8
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +3
Query: 72 IVSEPVYYIQHYEEPELLTSSRVRGDALGALTLNSDCT 185
I E + +HY +P +S RG+ L +T D T
Sbjct: 228 ITGESLAVDKHYGDPTFASSGVKRGEGLMVVTATGDST 265
>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 392
Score = 25.0 bits (52), Expect = 3.7
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3
Query: 54 VQSLYLIVSEPVYYIQHYEEPELL 125
+ SLYL+ ++PV Y+ + E + L
Sbjct: 216 INSLYLLTAKPVIYLVNMSERDFL 239
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 24.6 bits (51), Expect = 4.9
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = -2
Query: 341 IRET*SVAVYIIQCHSSDCSA*FLPNS*V*GTDSAYYILVATSKGYFN 198
+R T VAV+IIQ H+ + V S ILVA+ K YFN
Sbjct: 589 LRNTMKVAVHIIQQHTVLIKPFRDDSKFVDENQSLNNILVASLKFYFN 636
>SPAC23H3.05c |swd1||COMPASS complex subunit
Swd1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 24.2 bits (50), Expect = 6.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -2
Query: 242 SAYYILVATSKGYFNSSTRGTIGVERESSERVPADS 135
S YIL TSKG+F+ T + SS R+ + S
Sbjct: 176 SGEYILSGTSKGWFHVIDASTTKI--RSSHRITSQS 209
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 23.8 bits (49), Expect = 8.5
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = +3
Query: 171 NSDCTSGAGVEVPFAGSDENIVCAIGSLYLTIRQKL----CAAIAGVALDYV 314
N D A E F G+ ++V SLY+T+ L C I + +D+V
Sbjct: 415 NPDYARIATFEDKFVGAISSLVAEDNSLYVTVLCVLAPYRCLGIGSLLIDHV 466
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 23.8 bits (49), Expect = 8.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 205 TSTPAPEVQSELSVRAPSASP 143
T TPAP+V SE + + +A P
Sbjct: 158 TETPAPKVTSESTKKETAAPP 178
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,503,312
Number of Sequences: 5004
Number of extensions: 28075
Number of successful extensions: 105
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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