Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_J22
(366 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0007 - 18858587-18859529,18860434-18860830,18861674-18861812 29 1.1
01_07_0224 - 42121011-42122486 29 1.5
08_02_1455 + 27230134-27231110,27231195-27231327,27231417-272315... 28 2.0
04_03_0057 + 10407402-10407452,10407540-10407782,10408506-104089... 28 2.6
12_02_0306 + 17307166-17309091 26 7.9
09_03_0052 + 11904633-11905616,11906324-11906491,11906588-11906977 26 7.9
07_03_0234 + 15561003-15561482,15562495-15562590,15562663-15562758 26 7.9
02_03_0127 + 15547048-15547302,15547511-15548459,15548562-155486... 26 7.9
01_07_0299 + 42594363-42594424,42594516-42594798,42595185-425954... 26 7.9
>02_04_0007 - 18858587-18859529,18860434-18860830,18861674-18861812
Length = 492
Score = 29.1 bits (62), Expect = 1.1
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +3
Query: 129 SSRVRGDALGALTLNSDC 182
SSR +GD+LG T+NSDC
Sbjct: 337 SSRSQGDSLGNSTVNSDC 354
>01_07_0224 - 42121011-42122486
Length = 491
Score = 28.7 bits (61), Expect = 1.5
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Frame = +3
Query: 9 FGKIVFLLLVALCVGVQSLYLIVSEPVYYIQHYEE--PELLTS-SRVRGD-ALGALT--- 167
F + F+L V LCV + + IV P Y + + + P + TS +RV GD G +
Sbjct: 24 FVQFFFVLSVVLCVLLYAPRFIVLTPTYGLDFFPQPPPNVTTSPARVVGDHNAGEVVVLD 83
Query: 168 --LNSDCTSGAGVEVPFAGSDENI-VC 239
L S C+S AG + SD N VC
Sbjct: 84 NQLRSPCSSLAGDTICCDRSDFNTDVC 110
>08_02_1455 +
27230134-27231110,27231195-27231327,27231417-27231501,
27233372-27233571
Length = 464
Score = 28.3 bits (60), Expect = 2.0
Identities = 22/71 (30%), Positives = 31/71 (43%)
Frame = -3
Query: 358 NPGKSVSVRLNPWPYT*SSATPAIAAHSFCLIVKYKEPIAHTIFSSLPAKGTSTPAPEVQ 179
+PG+ V +P P SSA A AA S+ + P AH P +P P++
Sbjct: 17 SPGQPPVVPRSPTPLDLSSAAAAAAAASYRRLSPSLRPPAH------PQARLPSPYPQIP 70
Query: 178 SELSVRAPSAS 146
S S A +S
Sbjct: 71 SSSSAAAAGSS 81
>04_03_0057 +
10407402-10407452,10407540-10407782,10408506-10408976,
10409058-10409483,10409559-10409618,10409694-10409807,
10409888-10409956
Length = 477
Score = 27.9 bits (59), Expect = 2.6
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -3
Query: 307 SSATPAIAAH-SFCLIVKYKEPIAHTIFSSLPAKGTSTPAPEVQSELSVRAPSAS 146
+S TPA AH S ++ A T F P P+P VQ LS R PSA+
Sbjct: 385 TSPTPAAPAHFSRKKKTAVRKKSAATTFKPAPPP-PPPPSPPVQQTLSDRTPSAT 438
>12_02_0306 + 17307166-17309091
Length = 641
Score = 26.2 bits (55), Expect = 7.9
Identities = 18/64 (28%), Positives = 25/64 (39%)
Frame = +3
Query: 147 DALGALTLNSDCTSGAGVEVPFAGSDENIVCAIGSLYLTIRQKLCAAIAGVALDYVYGHG 326
D +G + +GAGV G + I+C G R + + GV G G
Sbjct: 54 DGVGVRLIGVGAGAGAGVGCSLTGGGDGILCG-GGARGGARDGVGVTVTGVGAGAGAGVG 112
Query: 327 LSLT 338
SLT
Sbjct: 113 SSLT 116
>09_03_0052 + 11904633-11905616,11906324-11906491,11906588-11906977
Length = 513
Score = 26.2 bits (55), Expect = 7.9
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = +3
Query: 123 LTSSRVRGDALGALTLNSDCTSGAGVEVPFAGSDEN--IVCA 242
L S +R A +S G GVEV G EN +VCA
Sbjct: 40 LKSGHLREGEAAAAASSSSAAVGVGVEVEKEGKKENKVVVCA 81
>07_03_0234 + 15561003-15561482,15562495-15562590,15562663-15562758
Length = 223
Score = 26.2 bits (55), Expect = 7.9
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = -3
Query: 226 SSLPAKGTS-TPAPEVQSELSVRAPSASPRT 137
S L + G+S +P P +S S R+P ASPRT
Sbjct: 62 SFLSSPGSSASPNPAPRSRSSRRSPLASPRT 92
>02_03_0127 +
15547048-15547302,15547511-15548459,15548562-15548677,
15548784-15548890,15550639-15550873,15550957-15551011,
15551802-15551893
Length = 602
Score = 26.2 bits (55), Expect = 7.9
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 5/112 (4%)
Frame = +3
Query: 45 CVGVQSLYLIVSEPVYYIQHYEEPELLTSSRVRGDALGALTLNSDCTSGAGVEVPFA--G 218
C+ ++ IVSE + + HYE EL + D +G + + A F G
Sbjct: 367 CLEPCKVFNIVSETISLLGHYEPNELQRNDLF--DTIGCIFMMMMANLCATEMYHFLIDG 424
Query: 219 SDENIV-CA--IGSLYLTIRQKLCAAIAGVALDYVYGHGLSLTDTLFPGFGD 365
S + V CA GSL ++ +K I AL + + + D L PGFG+
Sbjct: 425 SKASKVRCADQDGSLKASVPRKSSTVI---ALRFQNTQQVYIQDKLGPGFGE 473
>01_07_0299 + 42594363-42594424,42594516-42594798,42595185-42595409,
42596395-42596592,42596871-42597325,42597824-42597962,
42598035-42598113,42598686-42598924,42599058-42599362,
42599449-42599560,42599640-42599804,42599933-42600071,
42600111-42600219,42600733-42600823,42600940-42601064,
42601148-42601297,42601383-42601455,42601630-42601810,
42601888-42602046,42602939-42603085,42603176-42603220,
42603305-42603382,42603565-42603719,42603875-42603927,
42604012-42604090,42604271-42604357
Length = 1310
Score = 26.2 bits (55), Expect = 7.9
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 252 LYLTIRQKLCAAIAGVALDYVYG-HGLSLTDTLFPGFGD 365
L+ T R K+ + GVA+ Y Y GL + P FGD
Sbjct: 908 LWFTWRMKILSGRRGVAILYAYMLLGLGFLRAVSPDFGD 946
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,869,323
Number of Sequences: 37544
Number of extensions: 189134
Number of successful extensions: 569
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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