Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_J22
         (366 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   0.85 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   0.85 
AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           21   6.0  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          20   8.0  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          20   8.0  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          20   8.0  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          20   8.0  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          20   8.0  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          20   8.0  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          20   8.0  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    20   8.0  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 0.85
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 39  ALCVGVQSLYLIVSEPVYYIQHYEEP 116
           A+CVGV +  +I   PV Y+  YE P
Sbjct: 501 AICVGVFTFNIIKFVPVKYLT-YEYP 525


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 0.85
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 39  ALCVGVQSLYLIVSEPVYYIQHYEEP 116
           A+CVGV +  +I   PV Y+  YE P
Sbjct: 554 AICVGVFTFNIIKFVPVKYLT-YEYP 578


>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 20.6 bits (41), Expect = 6.0
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 96  IQHYEEPELLTSSRV 140
           +Q +EE ++LTSS V
Sbjct: 47  VQGFEEQDILTSSGV 61


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -1

Query: 108 HSVEYSKQAR*QSGIGFVRRRTERQAIKRR 19
           H  E  +Q+R +     +R RT+ + ++RR
Sbjct: 10  HHDERFRQSRSEDSETGLRSRTQEERLRRR 39


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -1

Query: 108 HSVEYSKQAR*QSGIGFVRRRTERQAIKRR 19
           H  E  +Q+R +     +R RT+ + ++RR
Sbjct: 10  HHDERFRQSRSEDSETGLRSRTQEERLRRR 39


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -1

Query: 108 HSVEYSKQAR*QSGIGFVRRRTERQAIKRR 19
           H  E  +Q+R +     +R RT+ + ++RR
Sbjct: 10  HHDERFRQSRSEDSETGLRSRTQEERLRRR 39


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -1

Query: 108 HSVEYSKQAR*QSGIGFVRRRTERQAIKRR 19
           H  E  +Q+R +     +R RT+ + ++RR
Sbjct: 10  HHDERFRQSRSEDSETGLRSRTQEERLRRR 39


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -1

Query: 108 HSVEYSKQAR*QSGIGFVRRRTERQAIKRR 19
           H  E  +Q+R +     +R RT+ + ++RR
Sbjct: 10  HHDERFRQSRSEDSETGLRSRTQEERLRRR 39


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -1

Query: 108 HSVEYSKQAR*QSGIGFVRRRTERQAIKRR 19
           H  E  +Q+R +     +R RT+ + ++RR
Sbjct: 10  HHDERFRQSRSEDSETGLRSRTQEERLRRR 39


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -1

Query: 108 HSVEYSKQAR*QSGIGFVRRRTERQAIKRR 19
           H  E  +Q+R +     +R RT+ + ++RR
Sbjct: 10  HHDERFRQSRSEDSETGLRSRTQEERLRRR 39


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -1

Query: 108 HSVEYSKQAR*QSGIGFVRRRTERQAIKRR 19
           H  E  +Q+R +     +R RT+ + ++RR
Sbjct: 10  HHDERFRQSRSEDSETGLRSRTQEERLRRR 39


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,068
Number of Sequences: 438
Number of extensions: 2183
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8680350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)