Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_J19
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S...   157   9e-40
SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa...   153   2e-38
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz...    28   0.92 
SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomy...    26   3.7  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    26   3.7  
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo...    26   3.7  
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ...    25   8.6  
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz...    25   8.6  
SPAC644.05c |||deoxyuridine 5'-triphosphate nucleotidohydrolase ...    25   8.6  

>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score =  157 bits (382), Expect = 9e-40
 Identities = 82/154 (53%), Positives = 107/154 (69%), Gaps = 1/154 (0%)
 Frame = +2

Query: 83  MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 262
           ML+PK+NR +I++ LF++GV+VAKKD++ PKHP++  +PNLQVIKA QSL SRGY+K ++
Sbjct: 1   MLIPKENRKAIHQALFQQGVLVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRY 59

Query: 263 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRS 442
            W  FY+ LTNEG+EYLR +LHLP E+VPAT KR VR    R    GRP+   R++   +
Sbjct: 60  NWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPAAPR---AGRPEPRERSSAADA 116

Query: 443 AYRRAPPAGAPHDKKAD-VGPGSADVEFRGGFGR 541
            YRRA       +KK D   PG     FRGGFGR
Sbjct: 117 GYRRA-------EKKDDGAAPGGFAPSFRGGFGR 143


>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score =  153 bits (371), Expect = 2e-38
 Identities = 80/153 (52%), Positives = 102/153 (66%)
 Frame = +2

Query: 83  MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 262
           ML+PK+NR +I++ LF +GV+VAKKD++ PKHP++  +PNLQVIKA QSL SRGY+K ++
Sbjct: 1   MLIPKENRKAIHQALFSQGVLVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRY 59

Query: 263 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRS 442
            W  FY+ LTNEG+EYLR +LHLP E+VPAT KR VR    R    GRP+   R + D +
Sbjct: 60  NWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPTAPR---AGRPEPRERASAD-A 115

Query: 443 AYRRAPPAGAPHDKKADVGPGSADVEFRGGFGR 541
            YRRA        K     P      FRGGFGR
Sbjct: 116 GYRRA------EKKDEGAAPSGFAPSFRGGFGR 142


>SPBC56F2.07c |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 28.3 bits (60), Expect = 0.92
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 396 QLAGLMLQHEQLKIDQLIGAHHQLELLMIRRLMS 497
           Q AGL+  HE L+  ++  AH +  LL +R+ ++
Sbjct: 758 QEAGLIAMHEDLEAKEICQAHFKTALLALRKAIT 791


>SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 215

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -1

Query: 546 RPLPKPPLNSTSAEPGPTSAFLSXXXXXXXXXXXADLSSAVRAGAS 409
           +PLP PP NS+     P SA               +++S V +G+S
Sbjct: 89  QPLPLPPRNSSLYARFPLSAGAGASSHSEETTPSHEVTSNVSSGSS 134


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1066

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = -2

Query: 488  PSYHEELQLVVRADKLIYLQLFVLEHQACQLHHDVLSLYALTSSGLLVQ-FQEVSAGKF* 312
            PSY +     +  +K ++L L  L H   +    +LSLY  + +  +V+    V    F 
Sbjct: 992  PSYFDVFFPSLGMEKRVHLDLLNLTHVRFEEDQGILSLYDESGAVTVVKLLTSVKVKLFV 1051

Query: 311  GIQYPHLLNTS 279
             +  P L+N S
Sbjct: 1052 QLSTPPLINVS 1062


>SPBC800.09 |sum2||G2/M transition checkpoint protein
           Sum2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 404 RPDAPARTAEDRSAYRRAPPAGAPH 478
           +P  P +     + Y++APPAGAP+
Sbjct: 113 QPPQPVQPNPYGAPYQQAPPAGAPY 137


>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/53 (20%), Positives = 27/53 (50%)
 Frame = -3

Query: 190 LEIWMFGCMVVFLSYHDSLLEEVLIDRNTVLFWHQHLGQPTFHPRAEFCSPGS 32
           +++W  G ++  L   ++  +E + +    L + +   +P++HP     SPG+
Sbjct: 194 VDVWSCGIILFALLLGNTPWDEAISNTGDYLLYKKQCERPSYHP-WNLLSPGA 245


>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
           Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 504

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 302 IEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVGR 406
           IEYL    + PP + P  L   +  E +  G +GR
Sbjct: 199 IEYLPSQNYTPPSLEPNKLDEGMFLEGIGAGGIGR 233


>SPAC644.05c |||deoxyuridine 5'-triphosphate nucleotidohydrolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
 Frame = +2

Query: 386 RRGAVGRPDAPARTAEDRSAYRR-APPAGAPHDKKADVGPGSADVEFRG 529
           RRG V   D     A     Y R AP +G       D G G  D ++RG
Sbjct: 37  RRGKV-LVDTDLAIAVPEGTYGRVAPRSGLASKHSIDTGAGVIDADYRG 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,303,632
Number of Sequences: 5004
Number of extensions: 45276
Number of successful extensions: 168
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)