Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_J18
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    26   3.8  
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac...    26   3.8  
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    26   5.0  
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    25   6.6  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    25   8.8  
SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc...    25   8.8  

>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +1

Query: 31  NYNNPSSATPLLVPSALEHYQTALTDPAFYMIWKRVLKMFSLLHQRL 171
           N ++P  +  +  P  L     A T+P    ++++ L++ SL HQRL
Sbjct: 230 NKSSPFGSATVQTP-CLHSVPDAFTNPDVATLYQKFLRLQSLEHQRL 275


>SPCC1827.02c |||cholinephosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 354

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 383 KLQVKLPRRWRLSFSWHLNMTAAVLRSHYMSTQRISSC*ITSF 511
           +L V L ++  L    H+ +    LR+H++ST R     I SF
Sbjct: 246 ELNVSLFKKNELDLRHHIKVLRDTLRNHWVSTTRDLKADIKSF 288


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -1

Query: 91  GSVQ-GQMEPITGLR-YWDCYNYVDATKSFLE 2
           G+V+ G +EP  G   Y D   YVD TKS+ E
Sbjct: 15  GNVKIGNVEPAKGNEGYVDNAGYVDCTKSYFE 46


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -2

Query: 429 QEKLNLHLLGNFTCNLDPNVEFLM 358
           QE++ L +L NFTC  + +V+FL+
Sbjct: 528 QEQM-LQVLRNFTCQKEESVDFLL 550


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = +1

Query: 436 KYDSRGFEIPLHVNSENFFLLNHFIHELPAGESVIVK---ESTENLFTVDDFKSANEIYV 606
           KY+  G  +P+     N+F L+HFIH L     ++ K         F++ + K  NE Y+
Sbjct: 667 KYEDHGKNLPI-----NYFGLDHFIH-LRVWYVLLHKIYFFIASAYFSLKNEKFENEFYL 720

Query: 607 KAQN 618
            AQ+
Sbjct: 721 LAQD 724


>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +1

Query: 94  TALTDP--AFYMIWKRVLKMFSLLHQ-RLPEYKEEELALPDVAXQKVEVDKL 240
           T +TDP  A Y       + +   H+ RL EY+E ELA  +   ++ E++KL
Sbjct: 92  TFITDPKHADYAAESGASRNYEPWHEKRLQEYEENELAERNDIPEEDEMEKL 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,337,953
Number of Sequences: 5004
Number of extensions: 44817
Number of successful extensions: 130
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)