Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_J16
(404 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0651 - 23164377-23165969 30 0.61
09_06_0289 - 22053561-22055666,22055745-22055771 29 1.4
11_04_0094 + 13418604-13418680,13419331-13419400,13420078-134202... 28 2.4
04_01_0332 + 4378111-4378329,4378862-4378997,4379113-4379165,437... 28 2.4
09_03_0058 + 11950668-11950701,11951068-11951106,11951586-119519... 27 4.3
03_05_0434 + 24252994-24253449,24254791-24254877,24255450-242557... 27 4.3
08_02_1550 - 27818271-27818618,27818743-27818955,27819079-278195... 27 5.6
05_05_0082 + 22252993-22255617 27 5.6
02_04_0221 - 21021886-21022144,21022227-21022345,21022681-210229... 27 7.5
01_06_0026 + 25738960-25739075,25740385-25740733,25740825-25741511 27 7.5
08_01_0064 + 444888-444959,445073-445277,445736-445901,446029-44... 26 9.9
05_01_0595 + 5344721-5345249,5349183-5349264,5349813-5350507,535... 26 9.9
03_02_0603 - 9786761-9786856,9787189-9787269,9787366-9787431,978... 26 9.9
02_03_0406 + 18663986-18664059,18665082-18665405,18665499-186655... 26 9.9
02_01_0317 - 2128660-2128776,2129281-2129364,2129463-2129543,213... 26 9.9
>06_03_0651 - 23164377-23165969
Length = 530
Score = 30.3 bits (65), Expect = 0.61
Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 2/105 (1%)
Frame = -3
Query: 396 NIIGFRKVRGNVEFVRKVLAFVVYEDILKEHIRLFEARRVRWTVEWIAKRLVINNKGLKW 217
N+ GF N+ +L D L+E ++LFE R + W ++++ GL
Sbjct: 178 NVFGF-----NLPVANALLDMYTKNDCLEEAVKLFEQMPARNIISW---TILVSGYGLAG 229
Query: 216 CQIMATR--FKRIYENKELEWISTFSTSWQHQSIWHAFKTFRHIQ 88
Q+ R F + E + W + + QH A FR +Q
Sbjct: 230 -QLDKARVLFNQCKEKDLILWTAMINACVQHGCFEEALTLFRDMQ 273
>09_06_0289 - 22053561-22055666,22055745-22055771
Length = 710
Score = 29.1 bits (62), Expect = 1.4
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 279 VRWTVEWIAKRLVINNKGLKWCQIMATRFKR 187
VRW EW + LV+ + GL+W ++A ++
Sbjct: 40 VRWWDEWQLRILVLGSLGLQWFLLVAAPMRK 70
>11_04_0094 +
13418604-13418680,13419331-13419400,13420078-13420236,
13420334-13420445,13420530-13420649,13422249-13422406,
13422987-13423217,13424621-13424713,13425088-13425227,
13426331-13426401,13427554-13427637,13427752-13427846
Length = 469
Score = 28.3 bits (60), Expect = 2.4
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -1
Query: 227 ASNGVRSWLLDSNGYTKTKNW-NGYPPSVPLGNINLFGMHSKPSDIY 90
+S+ SW L + K KNW NG ++ +G FG S P DI+
Sbjct: 35 SSSQFYSWCLQTKTQVKVKNWVNGTEGTIVVGLSARFGA-SVPRDIH 80
>04_01_0332 +
4378111-4378329,4378862-4378997,4379113-4379165,
4379286-4379394,4379467-4379603,4379698-4379894,
4379979-4380128,4380233-4380293,4380380-4380500,
4380901-4380991,4381116-4381209,4381446-4381541,
4382176-4382316,4382592-4382642,4383093-4383161,
4384072-4384142,4384244-4384336,4384820-4384910,
4386164-4386235,4387226-4387351,4387537-4387593,
4387926-4388000,4388570-4388658,4388814-4388891,
4389308-4389446,4389868-4389977,4390151-4390250,
4390548-4390655
Length = 977
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Frame = -1
Query: 227 ASNGVRSWLLDSNGYT-KTKNWNGYPPSVP----LGNINLFGMHSKPSDIYNGT 81
++NG R+WL+D N T K +W+ P +I+++ +H + ++ T
Sbjct: 286 SANGTRTWLVDINSETLKPASWDELSDEKPNLESFSDISIYELHIRDFSAHDST 339
>09_03_0058 +
11950668-11950701,11951068-11951106,11951586-11951982,
11952016-11952314,11953743-11956795
Length = 1273
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 396 NIIGFRKVRGNVEFVRKVLAFVVYEDILKEH 304
N++G + RG+V + V++ V YE + EH
Sbjct: 212 NVVGALRARGHVTILAAVVSNVTYECLSPEH 242
>03_05_0434 +
24252994-24253449,24254791-24254877,24255450-24255748,
24256146-24256383,24256907-24257441,24257527-24257729,
24258311-24258520
Length = 675
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 148 QYLLATSIYLACIQNLQTYTTERAAVF 68
++ L T +Y A N++TYTT+ A F
Sbjct: 181 EFFLQTRLYKADAVNMETYTTDEALEF 207
>08_02_1550 -
27818271-27818618,27818743-27818955,27819079-27819597,
27820239-27820357,27820457-27820763,27820840-27820922,
27821027-27821204,27821328-27821401,27822078-27822293,
27822724-27822757
Length = 696
Score = 27.1 bits (57), Expect = 5.6
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -1
Query: 233 TKASNGVRSWLLDSNGYTKTKN-WNGYPPSVPLGNINLFGMHSKPSDIYN 87
T S+ + + GY N W+GYPP V ++ G+ + P+ +YN
Sbjct: 155 TMYSSQAQPFYYQGPGYDNPSNEWDGYPPYV-----SVEGLEAGPAVVYN 199
>05_05_0082 + 22252993-22255617
Length = 874
Score = 27.1 bits (57), Expect = 5.6
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -3
Query: 195 FKRIYENKELEWISTFSTSWQHQSIWHAFKTFRHIQRNGLQYFDCTKVA 49
F+R + + W S S QH A +TFR ++ +G+Q T +A
Sbjct: 560 FERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLA 608
>02_04_0221 -
21021886-21022144,21022227-21022345,21022681-21022920,
21023064-21023171,21023272-21023331,21023991-21024066,
21024155-21024360,21024722-21024784,21024925-21025012,
21025515-21026015,21027206-21027603
Length = 705
Score = 26.6 bits (56), Expect = 7.5
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 315 LKEHIRLF-EARRVRWTVEWIAKRLVINNKG 226
+ +H+ F E R R + W+A +V+NNKG
Sbjct: 441 MAKHVTSFAEIRSFRGSPYWMAPEVVMNNKG 471
>01_06_0026 + 25738960-25739075,25740385-25740733,25740825-25741511
Length = 383
Score = 26.6 bits (56), Expect = 7.5
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Frame = +2
Query: 185 IRLNLVAMI*HHLRPLL-----LITSLLAIHSTVQRTRRASKSLICSLRMSSYTTKASTF 349
+R++L H+LRPL + L A + RTR A L+ SYTT A
Sbjct: 106 LRISLYVPDSHNLRPLAAYLRDFVKGLAAKYPFWNRTRGADHFLVACHDWGSYTTTAHGD 165
Query: 350 LTNST 364
L +T
Sbjct: 166 LRRNT 170
>08_01_0064 +
444888-444959,445073-445277,445736-445901,446029-446251,
446982-447058,447370-447557,447845-447942,448202-448335,
448421-448555,448832-448960,449263-449632,449897-450018,
450155-450274,450396-450626,450706-450894,450978-451089,
451193-451438
Length = 938
Score = 26.2 bits (55), Expect = 9.9
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 338 PSWYTKTSLKNILGSLKHVESAGRSNG*PKGLLSITKA 225
P WY++ +KN+ L+ + RS G GL +TKA
Sbjct: 57 PVWYSQQEVKNL---LQRISEGNRSTG---GLTFVTKA 88
>05_01_0595 + 5344721-5345249,5349183-5349264,5349813-5350507,
5350583-5350839,5350934-5351615,5351689-5351892,
5351981-5352715,5352799-5353181
Length = 1188
Score = 26.2 bits (55), Expect = 9.9
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -3
Query: 186 IYENKELEWISTFSTSWQHQSIW 118
+YE +E +W + T WQ S W
Sbjct: 1134 VYEWQEPQWYAQLYTQWQTTSSW 1156
>03_02_0603 -
9786761-9786856,9787189-9787269,9787366-9787431,
9788056-9788610,9788693-9788857,9789110-9789217,
9789905-9790109,9790347-9790434,9791590-9792109
Length = 627
Score = 26.2 bits (55), Expect = 9.9
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = -3
Query: 207 MATRFKRIYENKELEWISTFSTSWQHQSIWHAFKTFRHI--QRNGLQYFDCTKV 52
MA R+ RI+ +L +T + + + HA F + Q G+ F C +
Sbjct: 200 MAIRYARIFPQSQLLLCNTMEAFGKRKELKHALTVFGALKDQFGGINMFACRSI 253
>02_03_0406 +
18663986-18664059,18665082-18665405,18665499-18665559,
18666136-18666282,18666368-18666492,18666619-18666648,
18666689-18666893,18667532-18667741,18667886-18667888,
18670034-18670942,18671239-18672069
Length = 972
Score = 26.2 bits (55), Expect = 9.9
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -3
Query: 228 GLKWCQIMATRFKRIYENKELEWISTFSTSWQHQSI 121
G+KW QI T + E ++WI +W++ I
Sbjct: 166 GIKWLQISTTLIDGLIEPTFMKWIQE-EKAWENSKI 200
>02_01_0317 -
2128660-2128776,2129281-2129364,2129463-2129543,
2130230-2130407,2130530-2130673,2130780-2130826,
2131149-2131205,2131989-2132087,2132301-2132423,
2132514-2132636,2132859-2132972,2133612-2133800,
2134408-2134574,2134707-2134791,2134891-2135085,
2135162-2135251,2135418-2135603,2135885-2135959,
2136757-2136957
Length = 784
Score = 26.2 bits (55), Expect = 9.9
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -1
Query: 212 RSWLLDSNGYTKTKNWNGYPPSVPLGNINLFGMHSKPSDIY 90
R W+LD G T +W + SV LG + G + P +I+
Sbjct: 228 RKWILDHGGATYITSWGKFWLSV-LGVFDWSGNNPVPPEIW 267
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,749,660
Number of Sequences: 37544
Number of extensions: 217841
Number of successful extensions: 537
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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