Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_J16
(404 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF022976-11|AAC69080.1| 196|Caenorhabditis elegans Serpentine r... 29 0.96
U13019-7|AAC24445.2| 689|Caenorhabditis elegans Hypothetical pr... 29 1.3
Z66519-3|CAA91372.1| 634|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z66519-2|CAA91381.1| 634|Caenorhabditis elegans Hypothetical pr... 29 1.7
AF040661-3|AAG24226.1| 187|Caenorhabditis elegans Hypothetical ... 28 2.9
AF067949-8|AAX88812.1| 565|Caenorhabditis elegans Peroxisomal m... 27 5.1
AF067949-7|AAO25995.2| 626|Caenorhabditis elegans Peroxisomal m... 27 5.1
AF067949-6|AAC19238.1| 598|Caenorhabditis elegans Peroxisomal m... 27 5.1
U23176-4|AAC46716.1| 632|Caenorhabditis elegans Fem-3 mrna bind... 27 6.8
AC006701-1|AAM97962.1| 327|Caenorhabditis elegans Hypothetical ... 26 9.0
>AF022976-11|AAC69080.1| 196|Caenorhabditis elegans Serpentine
receptor, class w protein108 protein.
Length = 196
Score = 29.5 bits (63), Expect = 0.96
Identities = 13/46 (28%), Positives = 29/46 (63%)
Frame = +2
Query: 230 LLLITSLLAIHSTVQRTRRASKSLICSLRMSSYTTKASTFLTNSTF 367
++++ ++L +H+ + + ++A K SLR + +TTK F+T + F
Sbjct: 58 VIIVLTILLLHA-LNKAKKARKKKKSSLRDTDHTTKLVVFMTAAFF 102
>U13019-7|AAC24445.2| 689|Caenorhabditis elegans Hypothetical
protein T12A2.6 protein.
Length = 689
Score = 29.1 bits (62), Expect = 1.3
Identities = 21/69 (30%), Positives = 29/69 (42%)
Frame = -1
Query: 326 TKTSLKNILGSLKHVESAGRSNG*PKGLLSITKASNGVRSWLLDSNGYTKTKNWNGYPPS 147
T L IL +++ + + S L I+K S R WL + + N N PPS
Sbjct: 492 TNEDLNEILKTVRDIYRSSNSASIFMLLSDISKLSRDAR-WLDSWSAFRAIHNLNNGPPS 550
Query: 146 VPLGNINLF 120
PL LF
Sbjct: 551 YPLSLAALF 559
>Z66519-3|CAA91372.1| 634|Caenorhabditis elegans Hypothetical
protein B0334.3b protein.
Length = 634
Score = 28.7 bits (61), Expect = 1.7
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -3
Query: 270 TVEWIAKRLVINNKGLKWCQIMATRFKRIYENKELEWIST 151
T++ K LVI KG W + AT+ ++ +L W++T
Sbjct: 267 TLKSAKKPLVIVGKGAAWSERGATQVQQFLTKSKLPWLAT 306
>Z66519-2|CAA91381.1| 634|Caenorhabditis elegans Hypothetical
protein B0334.3a protein.
Length = 634
Score = 28.7 bits (61), Expect = 1.7
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -3
Query: 270 TVEWIAKRLVINNKGLKWCQIMATRFKRIYENKELEWIST 151
T++ K LVI KG W + AT+ ++ +L W++T
Sbjct: 267 TLKSAKKPLVIVGKGAAWSERGATQVQQFLTKSKLPWLAT 306
>AF040661-3|AAG24226.1| 187|Caenorhabditis elegans Hypothetical
protein W10G11.1 protein.
Length = 187
Score = 27.9 bits (59), Expect = 2.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 203 LLDSNGYTKTKNWNGYPPSVP 141
LLD+ +KNWN YP +P
Sbjct: 109 LLDARASECSKNWNPYPKEIP 129
>AF067949-8|AAX88812.1| 565|Caenorhabditis elegans Peroxisomal
membrane protein relatedprotein 5, isoform c protein.
Length = 565
Score = 27.1 bits (57), Expect = 5.1
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 193 ESSSHDLTPFEAFVIDNKPFGYPFDRPADSTCFKEPNMFFKDVFVYHEG 339
ES+ + FE V + F F R + C++ P+ FF+ F Y+ G
Sbjct: 233 ESAFYKSAEFE-HVFSDLSFDVLFKRLLNFMCWRFPSQFFQSFFDYYGG 280
>AF067949-7|AAO25995.2| 626|Caenorhabditis elegans Peroxisomal
membrane protein relatedprotein 5, isoform b protein.
Length = 626
Score = 27.1 bits (57), Expect = 5.1
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 193 ESSSHDLTPFEAFVIDNKPFGYPFDRPADSTCFKEPNMFFKDVFVYHEG 339
ES+ + FE V + F F R + C++ P+ FF+ F Y+ G
Sbjct: 233 ESAFYKSAEFE-HVFSDLSFDVLFKRLLNFMCWRFPSQFFQSFFDYYGG 280
>AF067949-6|AAC19238.1| 598|Caenorhabditis elegans Peroxisomal
membrane protein relatedprotein 5, isoform a protein.
Length = 598
Score = 27.1 bits (57), Expect = 5.1
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 193 ESSSHDLTPFEAFVIDNKPFGYPFDRPADSTCFKEPNMFFKDVFVYHEG 339
ES+ + FE V + F F R + C++ P+ FF+ F Y+ G
Sbjct: 233 ESAFYKSAEFE-HVFSDLSFDVLFKRLLNFMCWRFPSQFFQSFFDYYGG 280
>U23176-4|AAC46716.1| 632|Caenorhabditis elegans Fem-3 mrna binding
factor protein 2 protein.
Length = 632
Score = 26.6 bits (56), Expect = 6.8
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -1
Query: 299 GSLKHVESAGRSNG*PKGLLSITKASNGVRSWLLDSNGYTKTK 171
GS KH + S T+++N + +W LDSNG +++
Sbjct: 140 GSSKHYHLKYSRPALSRNSRSFTRSNNVLPTWSLDSNGEMRSR 182
>AC006701-1|AAM97962.1| 327|Caenorhabditis elegans Hypothetical
protein Y104H12D.2 protein.
Length = 327
Score = 26.2 bits (55), Expect = 9.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 240 INNKGLKWCQIMATRFKRIYENKELEWIST 151
I KG KW + A + + EN+E E ++T
Sbjct: 152 IERKGCKWVAVEAVKHFVVEENEEKEAVAT 181
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,429,279
Number of Sequences: 27780
Number of extensions: 197645
Number of successful extensions: 599
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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