Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_J14
(689 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0410 - 33728507-33729415,33729511-33729654,33730054-337309... 31 0.86
06_03_0256 - 18841627-18841993,18842087-18842415,18842512-188427... 31 1.1
12_02_1058 - 25735902-25736000,25736085-25736152,25736575-257366... 29 2.6
02_05_0994 - 33369971-33370759,33370856-33370956,33371092-333710... 28 6.1
09_02_0012 + 2965797-2966714,2966756-2967011,2967051-2967147,296... 28 8.0
02_02_0528 + 11199799-11200470,11201850-11201951,11202858-112034... 28 8.0
02_01_0524 + 3798019-3798265,3798419-3798651,3798765-3799014,379... 28 8.0
01_05_0178 - 18971075-18971863,18971960-18972197,18972791-18973041 28 8.0
>03_06_0410 -
33728507-33729415,33729511-33729654,33730054-33730920,
33731371-33731913
Length = 820
Score = 31.1 bits (67), Expect = 0.86
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 91 ELIKVNSIQISNGPLRRFSSLDITITYVPNVE 186
E I +NS S GPL R SS D+ I ++ N+E
Sbjct: 648 ETIDLNSWTRSGGPLMRTSSADMFINFIQNLE 679
>06_03_0256 -
18841627-18841993,18842087-18842415,18842512-18842749,
18844091-18844373,18844773-18844989,18845067-18845360
Length = 575
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/65 (33%), Positives = 31/65 (47%)
Frame = +1
Query: 394 FQQIFNRKKPNPNTEIIFYCMIGKRSGKAQQNAIDLGYKNTKNYLGSWTDWNNKVK*EFE 573
F +N + PN E I IG ++ KAQ+N + K YL D +K+K E
Sbjct: 442 FLHCWNILRDQPNPEDIKR-PIGTKTAKAQRNGKGRRKRKAKVYLSDTDDEIDKLKEVQE 500
Query: 574 LYNKG 588
+ NKG
Sbjct: 501 MANKG 505
>12_02_1058 -
25735902-25736000,25736085-25736152,25736575-25736638,
25736838-25736919,25737503-25737561,25737664-25737723,
25737884-25738046,25738236-25738360,25738827-25738859,
25739098-25739160,25739364-25739423,25739972-25740196,
25740272-25740433
Length = 420
Score = 29.5 bits (63), Expect = 2.6
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 12/125 (9%)
Frame = +1
Query: 208 EAKPAP-MIADYDYVKKATKDKNVLLIDVR----------EPDELKEHGIIPNSVNIPLG 354
EAK P +I + D VK+ K LID R EP + G +P S +P
Sbjct: 284 EAKLQPHLIWNLDQVKENIDAKTHQLIDARGKPRFDGAVPEPRKGIRSGHVPGSKCVPFP 343
Query: 355 SVT-SVLSSMTEKEFQQIFNRKKPNPNTEIIFYCMIGKRSGKAQQNAIDLGYKNTKNYLG 531
+ S + +E ++ F ++ + + ++ C G + LG + Y G
Sbjct: 344 QLLDSSQKLLPPEELRKRFEQEGISLDQPLVSSCGTGVTACILALGLHRLGKTDVPVYDG 403
Query: 532 SWTDW 546
SWT+W
Sbjct: 404 SWTEW 408
>02_05_0994 -
33369971-33370759,33370856-33370956,33371092-33371093,
33373009-33373610
Length = 497
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +1
Query: 457 IGKRSGKAQQNAIDLGYKNTKNYLGSWTDWNNKVK*EFELYNKG 588
IG ++ KAQ+N + K YL D +K+K E+ NKG
Sbjct: 384 IGTKTAKAQRNGKGKRKRKAKVYLSDTDDEIDKLKEVQEMANKG 427
>09_02_0012 +
2965797-2966714,2966756-2967011,2967051-2967147,
2967175-2967634,2967804-2968117,2968220-2968235
Length = 686
Score = 27.9 bits (59), Expect = 8.0
Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 3/121 (2%)
Frame = +1
Query: 91 ELIKVNSIQISNGPLRRFSSLDITITYVPNVESRRFYAQEAKPAPMIADYDYVKKATKDK 270
+L ++ S+ +N R D +I V + +RR + +K AP D + K
Sbjct: 357 QLAQLESLVPANESGRIPGQPDPSIENVKAITTRRGTNEISKGAPSSDSVDKEVQPEKTM 416
Query: 271 NVLLIDVREP---DELKEHGIIPNSVNIPLGSVTSVLSSMTEKEFQQIFNRKKPNPNTEI 441
D R+P ++ + ++I + + ++ + ++I N K+P P TE+
Sbjct: 417 PQEYCDTRKPSVDEQFTRFVEVIQKIHINVPLLDAMQVPTYARYLKEILNNKRPLPTTEV 476
Query: 442 I 444
+
Sbjct: 477 V 477
>02_02_0528 +
11199799-11200470,11201850-11201951,11202858-11203487,
11204287-11204547
Length = 554
Score = 27.9 bits (59), Expect = 8.0
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -3
Query: 216 FRLLRVKSSRLHIWNVSNCNIQ 151
F L+ + S +H+WN+ NC I+
Sbjct: 413 FLLVNLISEAIHLWNIRNCPIR 434
>02_01_0524 +
3798019-3798265,3798419-3798651,3798765-3799014,
3799104-3799249,3799372-3799577,3799721-3799845,
3800154-3800734
Length = 595
Score = 27.9 bits (59), Expect = 8.0
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Frame = +1
Query: 304 ELKEHGIIPNSV--NIPLGSVTSVLSSMTEKEFQQIFNRKKPNPNTEIIFYCMIGKRSGK 477
E++EHGI PN+ N L + + E Q R++ NTE F MI GK
Sbjct: 235 EMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTE-TFTLMINV-YGK 292
Query: 478 AQQNAIDLGYKNTKNYLG 531
A+Q + N +G
Sbjct: 293 AKQPMSSMKVFNEMKSIG 310
>01_05_0178 - 18971075-18971863,18971960-18972197,18972791-18973041
Length = 425
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 457 IGKRSGKAQQNAIDLGYKNTKNYLGSWTDWNNKVK*EFELYNKG 588
+G ++ KAQ+N + K YL D +K+K E+ NKG
Sbjct: 312 VGTKTAKAQRNGKGKRKRKAKVYLSDTDDEIDKLKEVQEMANKG 355
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,378,283
Number of Sequences: 37544
Number of extensions: 323098
Number of successful extensions: 855
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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