Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_J11
         (504 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5 ...    25   4.9  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    25   4.9  
SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|c...    25   6.5  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   8.5  
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    25   8.5  

>SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 358

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -1

Query: 489 KIVGLFEDICHRFEQTVKIDKIFFLLNSKSKLQSHVIKS 373
           ++V +  ++     + +KID+  FL  S  KLQ +++ S
Sbjct: 50  RVVAILRELYGPGSEKLKIDQRTFLTPSSKKLQINIVSS 88


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +2

Query: 356 STYRHSLLIT*DCSLDLELRRKKILSIFTVCSNLWQMSSNSPTIFY 493
           S +R   L++   +L  +L+ + I S F+ C    Q+   +PTI+Y
Sbjct: 625 SYFREEELLSVIWTLQEKLQTRIIESYFSTCIVKEQLELRAPTIYY 670


>SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
 Frame = -1

Query: 462 CHRFEQTVKIDKI------FFLLNSKSKLQSHVIKSEWRYVEPNIIVEFSKH 325
           CH  E+ +   KI        L+N+  ++QS+++K   +   PNI +   KH
Sbjct: 28  CHATEKVIADKKIKAQVYQIDLMNNGDEIQSYLLKKTGQRTVPNIFIH-QKH 78


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 231  RITLAEWGKCLQLDEYELEDR 293
            +  L+ W   L+L+EY+L +R
Sbjct: 3225 KFELSNWNNLLKLEEYKLSER 3245


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
 Frame = +3

Query: 87  IWKWCDLDAHDNDRFVSRHELFPIRAPL---MSLEHCI 191
           +WKW  +     D F+      P+R  +   MS++ C+
Sbjct: 75  LWKWSKVHEEAFDDFLRYKTRIPVRGAIMLDMSMQQCV 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,661,701
Number of Sequences: 5004
Number of extensions: 28943
Number of successful extensions: 95
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)