Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_J11
(504 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0118 - 8486986-8488925,8488971-8489041,8489884-8490728 29 1.6
01_05_0422 - 22018579-22018698,22019548-22019644,22019744-220199... 29 2.1
05_01_0079 + 531617-531734,531987-532059,532152-532261,532400-53... 29 2.8
02_04_0576 + 24009297-24009980,24010062-24010376 28 3.7
02_01_0582 + 4315336-4315956,4316060-4316188,4316282-4316581 27 6.5
04_04_0386 + 24865344-24865973,24866068-24866439 27 8.6
04_04_0353 - 24623452-24623691,24623871-24624134,24624264-24624449 27 8.6
02_04_0545 + 23778769-23779245,23779395-23779688 27 8.6
01_05_0126 - 18391879-18391937,18392021-18392102,18392508-183926... 27 8.6
>11_02_0118 - 8486986-8488925,8488971-8489041,8489884-8490728
Length = 951
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/65 (26%), Positives = 31/65 (47%)
Frame = +3
Query: 144 ELFPIRAPLMSLEHCIAPFLDQCDADEDHRITLAEWGKCLQLDEYELEDRCDEFIDDL*H 323
E+ ++ L S+ + D D D I + EW ++ Y++ED D+FI +
Sbjct: 34 EILTMKLELQSMNAFLLKLADMDDLD----IQVKEWRNQIRELSYDIEDCIDDFIHQMDG 89
Query: 324 GALRI 338
G+ R+
Sbjct: 90 GSSRV 94
>01_05_0422 -
22018579-22018698,22019548-22019644,22019744-22019908,
22022274-22022339,22022441-22022540,22022662-22023304
Length = 396
Score = 29.1 bits (62), Expect = 2.1
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Frame = +3
Query: 117 DNDRFVSRHELFPIRAPLMSLEHC-----IAPFLDQCDADEDHRITLAE 248
D+D F+S HEL P+ L E A + + D D D R+TL E
Sbjct: 322 DSDGFISEHELEPVLDKLHLSERYYARQQAAHAISEADKDHDGRLTLDE 370
>05_01_0079 +
531617-531734,531987-532059,532152-532261,532400-532543,
532628-532736,532836-533182,533260-533333,533478-533782,
534168-534294,534385-534414,534589-534837
Length = 561
Score = 28.7 bits (61), Expect = 2.8
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +3
Query: 177 LEHCIAPFLDQCDADEDHRITLA--EWGKCLQLD 272
L H + FL CD+ + H L+ EW LQLD
Sbjct: 322 LSHKVVVFLSTCDSVDFHHTVLSQLEWSPGLQLD 355
>02_04_0576 + 24009297-24009980,24010062-24010376
Length = 332
Score = 28.3 bits (60), Expect = 3.7
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Frame = +3
Query: 48 AESNLTRRWTNAAIWKWCDLDAHDNDRFVSRHELFPIRAPLMSLEHCIAPF-LDQCDAD 221
A + +T R AA+ CD D H + RHE P+ L PF Q AD
Sbjct: 78 APAAVTCRADAAALCAACDADIHSANPLARRHERLPVAPFFGPLADAPQPFPFSQAAAD 136
>02_01_0582 + 4315336-4315956,4316060-4316188,4316282-4316581
Length = 349
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 48 AESNLTRRWTNAAIWKWCDLDAHDNDRFVSRHELFPI 158
A + +T + AA+ CD D HD + RHE P+
Sbjct: 68 APAAVTCKADAAALCAACDSDIHDANPLARRHERVPV 104
>04_04_0386 + 24865344-24865973,24866068-24866439
Length = 333
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 48 AESNLTRRWTNAAIWKWCDLDAHDNDRFVSRHELFPI 158
A + +T R AA+ CD D H + RHE P+
Sbjct: 68 APAAVTCRADAAALCAACDADIHSANPLARRHERLPV 104
>04_04_0353 - 24623452-24623691,24623871-24624134,24624264-24624449
Length = 229
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 81 AAIWKWCDLDAHDNDRFVSRHELFPIRAPL-MSLEHC 188
AA+ CD++ H ++ S+H+ P+ A L +L C
Sbjct: 22 AALCARCDVEIHAANKLASKHQRLPLDAALPAALPRC 58
>02_04_0545 + 23778769-23779245,23779395-23779688
Length = 256
Score = 27.1 bits (57), Expect = 8.6
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = +3
Query: 81 AAIWKWCDLDAHDNDRFVSRHELFPIRAPLMSLEHC 188
AA+ CD++ H ++ +H+ P+ A L C
Sbjct: 22 AALCAACDVEVHAANKLAGKHQRLPLEALSARLPRC 57
>01_05_0126 -
18391879-18391937,18392021-18392102,18392508-18392667,
18392739-18392807,18392850-18392992,18393069-18393203,
18393283-18393341,18394090-18394187,18394347-18394510,
18394586-18394647,18394803-18394977,18396331-18396588,
18396694-18396841,18398458-18398813
Length = 655
Score = 27.1 bits (57), Expect = 8.6
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = -3
Query: 157 IGNNSCRDTNLSLSCASRSHHFQMAALVQRRVRLDSASRSMRR*WGVS 14
I S L ++ AS S ++ V RR +LDSA+ + RR WG S
Sbjct: 76 IARRSSPARQLVVAVASPSTELSRSSTVARR-QLDSAAVAGRRLWGTS 122
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,658,529
Number of Sequences: 37544
Number of extensions: 215140
Number of successful extensions: 633
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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