Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_J06
         (526 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.13 |mug84||pig-P |Schizosaccharomyces pombe|chr 1|||Ma...    26   4.0  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    25   5.2  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    25   6.9  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    25   6.9  

>SPAC22A12.13 |mug84||pig-P |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 120

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = -3

Query: 125 IKIQTVIYENYIIYVIDYSNFALYVVHNKNN*DKIKFTQI 6
           +K+ T  Y  +++Y++    F +Y+V        +KF +I
Sbjct: 2   VKVPTYEYYGFVMYLVSMLGFGVYIVWALTPAPVLKFFEI 41


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +2

Query: 227 NLLERF*MIDLSSSFNHSTIETHSIYSVLYFLVEDIRIDGIQEKKKLFNI 376
           N+LE+  ++   SS+ H      SIY +L+F + +     ++  + L NI
Sbjct: 118 NVLEKLLLLQDYSSWTHGNSCKTSIYILLFFALSNTEKTRVRSLQILANI 167


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 11/38 (28%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = +2

Query: 257 LSSSFNHSTIETH--SIYSVLYFLVEDIRIDGIQEKKK 364
           LSS  ++ST + +   +   L+F+ E++R+D + + +K
Sbjct: 451 LSSHLDYSTFKNYLMPLAITLHFISEELRLDSVVKPRK 488


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 358 FFLNTIYTYIFNKKIKYRVY*MSFNST 278
           + L   YTY+FN K+ Y+    ++ +T
Sbjct: 8   YLLRIRYTYVFNLKVSYQSERRTYGAT 34


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,941,115
Number of Sequences: 5004
Number of extensions: 36131
Number of successful extensions: 73
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)