Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_J06
         (526 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0822 + 28352941-28353825,28353863-28354016,28354714-283547...    28   4.0  
11_04_0463 - 17980031-17980189,17980269-17980536,17980620-179807...    27   7.0  

>04_04_0822 +
           28352941-28353825,28353863-28354016,28354714-28354754,
           28355060-28355310,28355411-28355591,28356138-28356323,
           28356396-28356569,28356992-28357150,28357424-28357501,
           28357612-28357748,28357980-28358044,28358115-28358148,
           28358216-28358372,28359135-28359196,28360041-28360118,
           28360940-28361042
          Length = 914

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +2

Query: 287 ETHSIYSVLYFLVEDIRIDGIQEKKKLFNIFCYNLIS 397
           + H ++S+L F++ DI   G  + KKL N   + LIS
Sbjct: 502 DLHELWSLLEFMMPDIFATGDIDLKKLLNAEDHELIS 538


>11_04_0463 -
           17980031-17980189,17980269-17980536,17980620-17980758,
           17981498-17981588
          Length = 218

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 269 KNLKDRSFKTVPVNCSDLFYIPLIFCYY*ILRF 171
           K+LKD+  K  P N SDL + P ++  Y  + F
Sbjct: 64  KHLKDKLKKNPPANYSDLLWEPSLWTTYVKIHF 96


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,102,270
Number of Sequences: 37544
Number of extensions: 156399
Number of successful extensions: 222
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)