Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_J05
         (577 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1355 + 32851514-32851696,32852132-32852224,32852334-328524...    32   0.38 
04_04_1127 - 31098233-31098326,31099968-31100047,31100198-311003...    30   1.1  
07_03_1486 + 26899479-26899549,26899861-26899989,26900649-269008...    29   2.7  
10_08_0856 + 21099162-21099698,21100134-21101020,21101149-21101197     28   6.1  
07_03_0710 - 20873420-20874745                                         28   6.1  
12_01_0836 - 7801155-7801454,7801850-7801914,7802237-7802562,780...    27   8.1  

>04_04_1355 +
           32851514-32851696,32852132-32852224,32852334-32852485,
           32852702-32852837,32852947-32853102,32853233-32853312,
           32853475-32853568
          Length = 297

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
 Frame = +1

Query: 31  LSNFDESQYELL-CLNRDAGGRDSFSNYATCNIAMSPSRTWLSAKDFLSDVSIAHTPLSL 207
           + NF++++  LL  LN+DA   ++ +N   C++ +       SA  +L+ + +AH    L
Sbjct: 224 MGNFEDAEGLLLESLNKDAKDAETLANLVVCSLNLGK-----SASRYLNQLKLAHPDHML 278

Query: 208 AQLLDTRSDLFN 243
            + + +  D F+
Sbjct: 279 VKRMSSAEDSFD 290


>04_04_1127 -
           31098233-31098326,31099968-31100047,31100198-31100353,
           31100481-31100616,31101195-31101346,31102307-31102390,
           31102495-31102656
          Length = 287

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = +1

Query: 31  LSNFDESQYELL-CLNRDAGGRDSFSNYATCNIAM-SPSRTWLS 156
           + +FDE++  LL  LN+DA   ++ +N   CN+ +  PS  +LS
Sbjct: 214 MGSFDEAETLLLEALNKDAKDPETLANLIVCNLHLGKPSSRYLS 257


>07_03_1486 +
           26899479-26899549,26899861-26899989,26900649-26900834,
           26901025-26901247,26901662-26901666,26901796-26901924,
           26902697-26902894,26903138-26903356,26903461-26903699,
           26903797-26903888,26904009-26904224,26904327-26904554,
           26904631-26904722,26904806-26904899,26905475-26905567,
           26905667-26906640,26906727-26906841,26907135-26908895
          Length = 1687

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 2   EMSLSFQVPTYPTSTRASTNCSA*TATPEDGTRSPTMP 115
           E  LSF  P  PTS R +T+  + + +P+ G +  ++P
Sbjct: 834 EFGLSFPGPVSPTSGRQTTSLYSGSFSPKAGNKQSSLP 871


>10_08_0856 + 21099162-21099698,21100134-21101020,21101149-21101197
          Length = 490

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = -2

Query: 315 SVVARPVASLPENNVVVLQEFAVNIEQVAPSVQQLGQAQ 199
           S  A   A LPE  V      A  +E+VA SVQ+  QAQ
Sbjct: 14  SFAAAAAAKLPEAAVAAAGGAAEAVEEVASSVQEQVQAQ 52


>07_03_0710 - 20873420-20874745
          Length = 441

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 154 SAKDFLSDVSIAHTPLSLAQLLDTRSDL 237
           S   +L D++I   PL L  +LDT SDL
Sbjct: 88  STATYLVDIAIGTPPLPLTAVLDTGSDL 115


>12_01_0836 -
           7801155-7801454,7801850-7801914,7802237-7802562,
           7805936-7806372
          Length = 375

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 168 EILGGQPSSRWRHGYVTCGIVGERVPSSGVAVQAEQFVLAL 46
           E+LGG   S      +  G+V E + ++G AV AE+    L
Sbjct: 29  ELLGGSVVSMTLKAAIELGLVDELLAAAGAAVTAEELAARL 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,711,189
Number of Sequences: 37544
Number of extensions: 295488
Number of successful extensions: 945
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)