Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_J04
         (519 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.02 |||ribonuclease H2 complex subunit|Schizosaccharomyce...    28   0.73 
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M...    27   1.7  
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c...    26   2.9  
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    25   5.1  
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma...    25   6.8  
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    25   9.0  

>SPAC4G9.02 |||ribonuclease H2 complex subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 232 MDLIFNWEKDLGKYKWILVKDVI 300
           +D IF W+ D+ +Y W   KD++
Sbjct: 259 VDKIFGWKGDIVRYSWKTAKDLL 281


>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 556

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 235 DLIFNWEKDLGKYKWILVKDVILIV 309
           D I NWE  LGK+ ++L+   ILI+
Sbjct: 525 DKIINWEIRLGKFGYVLLGIQILIL 549


>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 579

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = +3

Query: 255 KRSRKIQMDSRKGCHINCFWIICINSRSNTEYKRNYIY*F*NKL 386
           K+ R+     +  C I C  ++ ++  + + Y RN +Y    KL
Sbjct: 86  KKFRQFSETEKSECFIKCLLLLILSLGNYSPYSRNLLYSIAEKL 129


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 241  IFNWEKDLGKYKWILVKDVILIVFGLFVLIAGV 339
            IF W K   +   + V  + +  FG+F LIAGV
Sbjct: 929  IFGWFKGGHQTSIVAVIRIWMYSFGIFCLIAGV 961


>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 396

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -3

Query: 124 IRLFYTLQLNIPDNNIFFPYLYYKTTHVNLTTVCLHS 14
           +RL  +  +   D + F PY+  KT  + +++V  HS
Sbjct: 134 VRLIPSKDIYYADASTFEPYVDEKTKAIGISSVMFHS 170


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 258 RSRKIQMDSRKGCHINCF 311
           R RKI+ D  + CH NCF
Sbjct: 30  RRRKIKCDKNRPCH-NCF 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,721,949
Number of Sequences: 5004
Number of extensions: 31423
Number of successful extensions: 87
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)