Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_J04
         (519 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr...    36   0.017
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein...    36   0.017
Z92803-8|CAB07245.1|  814|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U94835-1|AAC47510.1|  814|Caenorhabditis elegans multiple exosto...    29   2.6  
U28928-5|AAQ01535.1|  434|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U28928-4|AAA68337.2|  489|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AB077851-1|BAB83878.1|  814|Caenorhabditis elegans heparan sulfa...    29   2.6  
U39667-5|AAC69008.1|  190|Caenorhabditis elegans Hypothetical pr...    27   6.1  

>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical protein
            C10C6.1 protein.
          Length = 1565

 Score = 35.9 bits (79), Expect = 0.017
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = -2

Query: 329  INTNNPKTINMTSFTRIHLYFPRSFSQLKIKSIMLGAMSPRNE*KNAPSRP-ITCSNCGN 153
            I TN P ++  TS +  H + P S S +      L + +P N  + A S P  + SN G 
Sbjct: 1369 IETNRPSSLRSTSNSHHHHHHPASTSSVASAPATLPSTTPSNLSRMASSSPSSSASNSGT 1428

Query: 152  VAAAATS 132
             + AATS
Sbjct: 1429 SSPAATS 1435


>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
            protein.
          Length = 1565

 Score = 35.9 bits (79), Expect = 0.017
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = -2

Query: 329  INTNNPKTINMTSFTRIHLYFPRSFSQLKIKSIMLGAMSPRNE*KNAPSRP-ITCSNCGN 153
            I TN P ++  TS +  H + P S S +      L + +P N  + A S P  + SN G 
Sbjct: 1369 IETNRPSSLRSTSNSHHHHHHPASTSSVASAPATLPSTTPSNLSRMASSSPSSSASNSGT 1428

Query: 152  VAAAATS 132
             + AATS
Sbjct: 1429 SSPAATS 1435


>Z92803-8|CAB07245.1|  814|Caenorhabditis elegans Hypothetical
           protein K01G5.6 protein.
          Length = 814

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 299 MTSFTRIHLYFPRSFSQLKIKSIMLGAMSPRNE*K 195
           M  FT+I+ Y P  FSQ +  SI+     P+N  K
Sbjct: 775 MRLFTKIYGYNPLKFSQFRADSILFKTRLPQNHQK 809


>U94835-1|AAC47510.1|  814|Caenorhabditis elegans multiple exostoses
           homolog 2 protein.
          Length = 814

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 299 MTSFTRIHLYFPRSFSQLKIKSIMLGAMSPRNE*K 195
           M  FT+I+ Y P  FSQ +  SI+     P+N  K
Sbjct: 775 MRLFTKIYGYNPLKFSQFRADSILFKTRLPQNHQK 809


>U28928-5|AAQ01535.1|  434|Caenorhabditis elegans Hypothetical
           protein C44B7.6b protein.
          Length = 434

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
 Frame = +1

Query: 106 RYKKV*FSLLVAAAATLPQLEQVIGLEGAFFYSFLGLIAPSMMDLIF---NWEKDLGKYK 276
           RY  V    L++ A  +P+L  ++ L G      L L+ PS+  L+     +E  +G + 
Sbjct: 348 RYSIVIVVFLLSYA--IPRLSDMVPLVGVTAGMLLALVFPSLFHLLIFLPQFECRIG-FL 404

Query: 277 WILVKDVILIVFGLFVLIAG 336
           + +  D + I+ G+F +I G
Sbjct: 405 FDIFLDFVCIILGMFFVIYG 424


>U28928-4|AAA68337.2|  489|Caenorhabditis elegans Hypothetical
           protein C44B7.6a protein.
          Length = 489

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
 Frame = +1

Query: 106 RYKKV*FSLLVAAAATLPQLEQVIGLEGAFFYSFLGLIAPSMMDLIF---NWEKDLGKYK 276
           RY  V    L++ A  +P+L  ++ L G      L L+ PS+  L+     +E  +G + 
Sbjct: 403 RYSIVIVVFLLSYA--IPRLSDMVPLVGVTAGMLLALVFPSLFHLLIFLPQFECRIG-FL 459

Query: 277 WILVKDVILIVFGLFVLIAG 336
           + +  D + I+ G+F +I G
Sbjct: 460 FDIFLDFVCIILGMFFVIYG 479


>AB077851-1|BAB83878.1|  814|Caenorhabditis elegans heparan sulfate
           GlcNAc transferase-I/II protein.
          Length = 814

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 299 MTSFTRIHLYFPRSFSQLKIKSIMLGAMSPRNE*K 195
           M  FT+I+ Y P  FSQ +  SI+     P+N  K
Sbjct: 775 MRLFTKIYGYNPLKFSQFRADSILFKTRLPQNHQK 809


>U39667-5|AAC69008.1|  190|Caenorhabditis elegans Hypothetical
           protein C18A11.4 protein.
          Length = 190

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 417 KQIILCNSXXITYSRINRYNFSYTLCY 337
           K+++  N   I    I R NFSYT+CY
Sbjct: 97  KELLYWNGPHIGQFLIIRNNFSYTICY 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,353,271
Number of Sequences: 27780
Number of extensions: 170299
Number of successful extensions: 403
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)