Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_J04
         (519 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   4.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   4.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   4.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   4.3  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   5.7  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   5.7  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   7.6  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 188 PSRPITCSNCG 156
           P+  +TC+NCG
Sbjct: 421 PNEIVTCTNCG 431


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 188 PSRPITCSNCG 156
           P+  +TC+NCG
Sbjct: 407 PNEIVTCTNCG 417


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 188 PSRPITCSNCG 156
           P+  +TC+NCG
Sbjct: 441 PNEIVTCTNCG 451


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 188 PSRPITCSNCG 156
           P+  +TC+NCG
Sbjct: 390 PNEIVTCTNCG 400


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 85  NNIFFPYLYYKTTHV 41
           NN+F+PY  Y T ++
Sbjct: 223 NNLFYPYPPYGTFNI 237


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 253 EKDLGKYKWILVKDVILIV 309
           E+D G YKWI   D  ++V
Sbjct: 73  EEDDGPYKWISPGDTKVMV 91


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 37  NSRASFYNIDKEKICY 84
           NSRA+ YN D  ++ Y
Sbjct: 132 NSRANTYNFDYPQVPY 147


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,571
Number of Sequences: 438
Number of extensions: 2315
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)