Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_J01
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   0.45 
SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4...    29   0.78 
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    28   1.4  
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po...    27   1.8  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    27   3.2  
SPAC1805.16c |||purine nucleoside phosphorylase |Schizosaccharom...    26   4.2  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    26   4.2  
SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr 1...    26   5.5  
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    26   5.5  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    26   5.5  
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc...    26   5.5  
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    25   7.3  
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei...    25   7.3  
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||...    25   9.7  
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    25   9.7  
SPBC3H7.04 |||mitochondrial ribosomal protein subunit S26|Schizo...    25   9.7  

>SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 105

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 376 FITVSNVYFISQFEINSFNRSYFLI*VSEYCFSYVV 269
           F+  S    IS  ++N   R Y+ I    YCF Y++
Sbjct: 4   FVFESLCAMISTLKVNKIERGYWFIQCLRYCFIYII 39


>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
           4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 115 ELIISILEYSLWVDVTGQCQGREGKYGYYNLHV 17
           +L  + L+ ++WV VT   +   G YGY  LH+
Sbjct: 212 DLYSNNLKDAVWVAVTNYMKNLVGNYGYTELHI 244


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 21/82 (25%), Positives = 43/82 (52%)
 Frame = +2

Query: 377 LNDQFAVVSRDVFNSEVQNLNFGKNEEAANIINTWVEDHTNKRIKNLVDPSSLDSSTQCV 556
           L D   VV R V  +E  +++ G N   +  + +    +T+K+++ LV  SS+  + + +
Sbjct: 322 LGDNSLVVIRAVDLAEQIHVS-GINSFESKYLTSTGPKNTSKQLQGLVQFSSVSPNGELL 380

Query: 557 LVNAIYFKGSWKEQFDKELTQD 622
           L+++  F G      + +LT+D
Sbjct: 381 LMSSSSFNGHSVSVQEYDLTKD 402


>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 8/102 (7%)
 Frame = +2

Query: 98  NGNDQFTARMFNEVVKKNPDKSVILSAFSVMIPLAQLAIASTGESHDELLKAI------- 256
           N N Q  A    + + KN   S++    S     + L IAS   +H+ +   I       
Sbjct: 59  NANIQLLALTLTDAIVKNCKTSIVREISSRTFTDSLLKIASDSTTHNRVRSRIAVLVNEW 118

Query: 257 -DFPNDNVTKAVFTDLNQKVRSIKGVDLKLANKVYIANGNEL 379
            +    +   ++  D+ +K+R +  VDL+   K      NEL
Sbjct: 119 AEIMKKDPNMSLMQDICEKIRKLDIVDLRAPKKPEKEAMNEL 160


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = -2

Query: 613 QFLIKLFFPTSLKVNCIYENTLC---ATVQRTRIHQIFDT 503
           Q  ++LF+  S KVNC+Y        A +QR + + + D+
Sbjct: 461 QLAVQLFYHISKKVNCLYVEAFSSSDAVLQRIQDNAVVDS 500


>SPAC1805.16c |||purine nucleoside phosphorylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 315

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 427 HFRIKHISGHNSKLII*FI 371
           HF + H+ GH SKL   F+
Sbjct: 72  HFHVSHVPGHASKLYFAFL 90


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -3

Query: 462 AASSFLPKFKFCTSELNTSLDTTAN*SFNSLPLAMYTLLASLRSTPLIDLT 310
           A  +FL  F FC + +N SLD        +    +YTL+  L   P + +T
Sbjct: 289 ARLNFL-SFSFCVNPMNQSLDCNTTPHRRNASSIIYTLMYYLIIAPTLLIT 338


>SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 455

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -2

Query: 613 QFLIKLFFPTSL--KVNCIYENTLCATVQRTRIHQIFDTFIGVVFNPSIN 470
           QFL + F   +L  ++  +  +T+   V R    +  DTF+G++F    N
Sbjct: 176 QFLTEGFKARNLPIRIEAVINDTVGTLVTRAYTSKESDTFMGIIFGTGTN 225


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 514 IFDTFIGVVFNPSINNVSCFFIFTEI*VLHFRIKHIS 404
           I+D F+G   NP +  +  F +F E+ +  F +  IS
Sbjct: 188 IYDAFMGACLNPRLGKLLDFKMFFEVRIPWFILFFIS 224


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/57 (24%), Positives = 26/57 (45%)
 Frame = +2

Query: 266 NDNVTKAVFTDLNQKVRSIKGVDLKLANKVYIANGNELNDQFAVVSRDVFNSEVQNL 436
           ND + +A  +DL QK+         L N ++    ++  D+F+   R   +  + NL
Sbjct: 546 NDYIAQAGLSDLLQKIADTTDDKQALKNYLHSWKWDQQIDKFSTFIRKTLSETIDNL 602


>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 572

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 22/72 (30%), Positives = 31/72 (43%)
 Frame = +2

Query: 434 LNFGKNEEAANIINTWVEDHTNKRIKNLVDPSSLDSSTQCVLVNAIYFKGSWKEQFDKEL 613
           L FG NE     +   +E    K    L DP SL   T    ++ I F G+   +   +L
Sbjct: 219 LGFGANEAYRRYLGLLIESENGKVGNTLSDPCSLRGRTYD--IDGIEFAGTGDLKQCLKL 276

Query: 614 TQDRPFHVNKDK 649
           T +    +NKDK
Sbjct: 277 TYNL---LNKDK 285


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 1   HESHRQHEDYNNHI 42
           H SHR+HE Y  H+
Sbjct: 149 HGSHRRHEPYRTHL 162


>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
           Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
 Frame = +2

Query: 365 NGNELNDQFAVVSRDVFNSEVQNLNFGKNE----EAANIINTWVEDHTNKR 505
           NG ++ D   VV   VF  + QN    KNE    EA+    T V D T  +
Sbjct: 279 NGKQVGDLTLVVKSAVFREDKQNDENEKNENEPIEASESAPTNVSDSTEPK 329


>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 459

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 124 TCGELIISILEYSLWVDVTGQCQGREGKYGY 32
           TCG L+I I    LWV++T +    +G  G+
Sbjct: 22  TCGLLLIGIACNVLWVNMTARNILPKGNLGF 52


>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +3

Query: 444 VKMKKQLTLLILGLKTTPINVS 509
           + + +QLT+L+ G+ +TPI V+
Sbjct: 77  ISIYQQLTILLFGVLSTPITVN 98


>SPBC3H7.04 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 480 GLKTTPINVSKIWWILVRWTVAHSVF 557
           GL    + ++K WW ++ WTV ++ F
Sbjct: 188 GLNGKKMYITK-WWDMINWTVVNNRF 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,614,426
Number of Sequences: 5004
Number of extensions: 53214
Number of successful extensions: 174
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)