Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_I24
(566 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0376 - 22474473-22476947 30 1.5
04_04_0294 + 24204563-24204748,24205531-24205620,24205980-242062... 29 2.6
02_01_0777 - 5785295-5787370,5787723-5788769 29 2.6
03_02_0184 + 6232429-6232515,6232634-6232751,6233198-6233286,623... 29 3.4
03_01_0084 + 676538-676669,677828-677959,678085-678210,678820-67... 29 3.4
11_06_0634 - 25685216-25685329,25685407-25685511,25685681-256857... 28 4.5
11_05_0079 + 18914668-18914753,18915123-18915338,18915829-189158... 28 4.5
01_01_0836 + 6527902-6528218,6529280-6529632,6529722-6529889,653... 28 4.5
12_02_0625 - 21331209-21331273,21331364-21331555,21332348-213325... 28 6.0
07_03_1157 - 24419157-24419948 27 7.9
06_01_0267 - 1972988-1973148,1973275-1973403,1973881-1974024,197... 27 7.9
01_07_0021 - 40533864-40534583,40534779-40534814,40534909-405350... 27 7.9
>02_04_0376 - 22474473-22476947
Length = 824
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = -2
Query: 304 SPAGPKTLVPYACPSNLPRS-SLKNCRVYPALPNNPSSFCPSVPNTFPLPM 155
SPA P++ P A ++L + + + P+LP P+ PS+P + P+P+
Sbjct: 4 SPALPRSTNPAALLAHLAAVLTSPDWFLNPSLPRLPALLTPSLPESLPVPL 54
>04_04_0294 +
24204563-24204748,24205531-24205620,24205980-24206211,
24207180-24207457,24207576-24207647,24208054-24208295,
24208781-24209197,24209296-24209497,24209624-24209738,
24209821-24209906,24210235-24210354,24210431-24210519,
24210588-24210669,24211072-24211263,24211546-24211668
Length = 841
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 60 VSMPPSYKERYPEYYKFSKQARHPRDVTWDKNIGNGKV 173
+++P S + +Y K Q + PR + W KN+G K+
Sbjct: 644 LTVPASVDQLLSDYAKRFHQIKTPRKLLWKKNLGTVKL 681
>02_01_0777 - 5785295-5787370,5787723-5788769
Length = 1040
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = -3
Query: 555 KFKNHHMRFRNRAGIDLGTPYQACPGPRVLSDPPADKRGFLSKF 424
+ HH + +LG P Q C GP L+ P R L +F
Sbjct: 725 EISQHHAIIMLKTFCELGAPLQGCMGPGALTHLPWHARLSLERF 768
>03_02_0184 +
6232429-6232515,6232634-6232751,6233198-6233286,
6233364-6233428,6233520-6233608,6234167-6234300,
6234387-6235133
Length = 442
Score = 28.7 bits (61), Expect = 3.4
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = -2
Query: 322 LRSSTVSPAGPKTLVPYACPSNLPRSSLKNCRVYPALPNNPSSFCPSVPNTFPLPMF 152
L ++T S GP+++VP + PS + S L A P S+ P V PL F
Sbjct: 272 LSTTTPSSVGPRSVVPTSSPSLIGASPLSARSFSFASPAARSTTTPPVHRGAPLTPF 328
>03_01_0084 +
676538-676669,677828-677959,678085-678210,678820-678882,
678964-679061,679133-679340,679859-679930,680016-680108,
680297-680398,680568-680665,681059-681140,681274-681362,
681960-682065,682145-682210,682527-682633,682907-683027,
683226-683411,683490-683789,683887-683967,684061-684225,
684297-684383,684476-684601,684750-684830,684917-684988,
685353-685364
Length = 934
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -1
Query: 290 QNPGAVCVPFQLTAIVIEKLPGVSSFTE*SIVILSECTEYFSVA 159
+ PG C P +L AI+ +KLP VS + + I EYF ++
Sbjct: 504 RRPG--CSPKELFAIINDKLPTVSYESYIDVEIQQRAVEYFELS 545
>11_06_0634 -
25685216-25685329,25685407-25685511,25685681-25685740,
25685827-25685965,25686056-25686240,25686328-25686411,
25686499-25686621,25687088-25687267,25687364-25687433,
25687520-25687616,25687695-25687770,25688259-25688348,
25688383-25688529,25688647-25688715,25689004-25689177,
25689266-25689336,25689409-25689557,25690723-25690774,
25690865-25691120,25691196-25691287,25691420-25691541,
25691909-25692679,25692883-25692940,25693068-25693107,
25694462-25694595,25694685-25694793,25694896-25694991
Length = 1220
Score = 28.3 bits (60), Expect = 4.5
Identities = 18/57 (31%), Positives = 23/57 (40%)
Frame = +3
Query: 72 PSYKERYPEYYKFSKQARHPRDVTWDKNIGNGKVFGTLGQNDDGLFGKAGYTRQFFN 242
PSY R F + V +DK I +G G L + D G F A R F+
Sbjct: 579 PSYGYRGRVMLAFEENGSSKIGVRFDKQIPDGNDLGGLCEEDHGFFCSADLLRPDFS 635
>11_05_0079 +
18914668-18914753,18915123-18915338,18915829-18915895,
18916656-18916723,18916999-18917125,18918240-18918339,
18918405-18918433,18918678-18918730,18919246-18919732
Length = 410
Score = 28.3 bits (60), Expect = 4.5
Identities = 17/32 (53%), Positives = 20/32 (62%)
Frame = +1
Query: 445 LISWRITQHSGTRARLIRRSKVNSSTISKAHV 540
LISWRI Q+S A +I NSST KA+V
Sbjct: 363 LISWRIKQYSS--ALVIPEELKNSSTNGKANV 392
>01_01_0836 +
6527902-6528218,6529280-6529632,6529722-6529889,
6530004-6530051,6530142-6530372,6530435-6530548,
6530638-6530723
Length = 438
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -3
Query: 390 LPPICLLISRAAFAFLLEQSNRASEVRRCRLPDPKPWCRMRAL 262
L + + S + F ++L + S VRRC P PK CR A+
Sbjct: 356 LDHLAFVNSSSLFIYILGVLHSKSWVRRCDDPQPKAHCRPYAV 398
>12_02_0625 -
21331209-21331273,21331364-21331555,21332348-21332558,
21333600-21333700,21333839-21333844,21333956-21334051,
21334485-21334497
Length = 227
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -2
Query: 427 VPHTGSTCRQVWSSAYLLADIKGSVCI 347
VP TG+ +W SA+L AD+ GS I
Sbjct: 25 VPATGALRVWIWDSAHLQADLLGSPVI 51
>07_03_1157 - 24419157-24419948
Length = 263
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = -2
Query: 307 VSPAGPKTLVPYACPSNLPRSSLKNCRVYPALPNNPSSFCPSVP 176
V P PK VP+A LP+ L P LP + P VP
Sbjct: 172 VVPELPKPEVPHAAVPELPKPELPPHPAVPELPKHEEPPHPVVP 215
>06_01_0267 -
1972988-1973148,1973275-1973403,1973881-1974024,
1974368-1974493,1974595-1974720,1975149-1975241,
1975465-1975606,1976747-1976878,1976943-1977080,
1977431-1977523,1978186-1978389,1978568-1978656,
1978839-1978988,1979088-1979253,1979355-1979576,
1979687-1979872,1980289-1980411,1980511-1980611,
1982005-1982155
Length = 891
Score = 27.5 bits (58), Expect = 7.9
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +2
Query: 338 SNKNANAALDISKQIGGRPNLSASGAGVW-NFDKNPRLSAGG 460
S K ANA K G+P LSA+G G + P SAGG
Sbjct: 2 SGKVANAT---PKAAAGKPRLSAAGGGAYRRTSSGPLPSAGG 40
>01_07_0021 -
40533864-40534583,40534779-40534814,40534909-40535048,
40535837-40535922,40536430-40536653,40536770-40536865,
40538766-40538833,40539945-40540055,40540799-40540955
Length = 545
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Frame = -2
Query: 301 PAGPKTLVPYAC-----PSNLPRSSLKNCRVYPALPNNPSSF 191
PAGP T VPY P N P ++ +P+ PN P F
Sbjct: 480 PAGPMTAVPYNSYPVFPPMNYPMVNIP--PPFPSAPNTPPGF 519
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,508,903
Number of Sequences: 37544
Number of extensions: 455376
Number of successful extensions: 1334
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1334
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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