Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_I24
(566 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99278-1|CAB16490.1| 793|Caenorhabditis elegans Hypothetical pr... 29 2.3
AC024859-18|AAK29974.1| 121|Caenorhabditis elegans Hypothetical... 29 2.3
Z81097-10|CAB03169.1| 492|Caenorhabditis elegans Hypothetical p... 28 4.1
Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical pr... 28 4.1
DQ384615-1|ABD34785.1| 492|Caenorhabditis elegans ERGIC-53-like... 28 4.1
U61946-5|AAC24389.1| 391|Caenorhabditis elegans Hypothetical pr... 28 5.4
AF106579-6|ABS19465.1| 406|Caenorhabditis elegans Hypothetical ... 28 5.4
Z81564-6|CAB04572.1| 678|Caenorhabditis elegans Hypothetical pr... 27 7.1
Z81080-3|CAD30439.1| 608|Caenorhabditis elegans Hypothetical pr... 27 7.1
U58757-9|AAM75377.1| 503|Caenorhabditis elegans Hypothetical pr... 27 7.1
U58757-8|AAC47918.3| 506|Caenorhabditis elegans Hypothetical pr... 27 7.1
U34661-1|AAA92006.1| 962|Caenorhabditis elegans ionotropic glut... 27 7.1
L16559-2|AAA27933.3| 962|Caenorhabditis elegans Glutamate recep... 27 7.1
AF016853-1|AAB94552.1| 678|Caenorhabditis elegans HMP-2 protein. 27 7.1
U49831-8|AAA93409.2| 280|Caenorhabditis elegans Hypothetical pr... 27 9.4
>Z99278-1|CAB16490.1| 793|Caenorhabditis elegans Hypothetical
protein Y53C12B.1 protein.
Length = 793
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +1
Query: 181 HSDKMTMDYSVKLDTPGSFSMTIAVSWKGTHTAP 282
+++++ +YS+ LD P + +A +WK HTAP
Sbjct: 79 YNNQIIREYSIPLD-PSTTKPELARTWKTIHTAP 111
>AC024859-18|AAK29974.1| 121|Caenorhabditis elegans Hypothetical
protein Y71H2AM.5 protein.
Length = 121
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +3
Query: 57 QVSMPPSYKERYPEYY-KFSKQARHPRDVTWDK 152
+V +PP+ ER +Y KFS RHP W K
Sbjct: 4 EVEVPPTTYERLQQYKEKFSDALRHPDSPDWYK 36
>Z81097-10|CAB03169.1| 492|Caenorhabditis elegans Hypothetical
protein K07A1.8 protein.
Length = 492
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 344 KNANAALDISKQIGGRPNLSASGAGVW 424
++ N +DI+ +IGG+ + A G G+W
Sbjct: 83 ESENFQVDIALKIGGQGRVGADGLGIW 109
>Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical protein
T16G12.1 protein.
Length = 1890
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = +1
Query: 115 SKPVTLETSRGTRT*ATEKYSVHSDKMTMDYSVKLDTPGSFSMTIAVSWKGTHTAPGFWV 294
S P+ T RGT T + S SD+ + + TPG+ V++ G + A W+
Sbjct: 1474 SYPIITLTLRGTSTVQANQQSCMSDETLWNVPLFTQTPGALDFNWFVNFTGGNDAT--WL 1531
Query: 295 R 297
R
Sbjct: 1532 R 1532
>DQ384615-1|ABD34785.1| 492|Caenorhabditis elegans ERGIC-53-like
protein protein.
Length = 492
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 344 KNANAALDISKQIGGRPNLSASGAGVW 424
++ N +DI+ +IGG+ + A G G+W
Sbjct: 83 ESENFQVDIALKIGGQGRVGADGLGIW 109
>U61946-5|AAC24389.1| 391|Caenorhabditis elegans Hypothetical
protein F47C12.2 protein.
Length = 391
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -2
Query: 349 ILIRAIQPGLRSSTVSPAGPKTLVPYACPSNLPRSSLK 236
+L+ A+QP L SS +P T V CP + R K
Sbjct: 21 LLVAAVQPVLSSSKSTPEAQLTDVELTCPDDWIRHGTK 58
>AF106579-6|ABS19465.1| 406|Caenorhabditis elegans Hypothetical
protein F54E2.4 protein.
Length = 406
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = -2
Query: 373 ADIKGSVCILIRAIQP----GLRSSTVSPAGPKTLVPYACP 263
A K S CILI A P G +S+ SPA P+T V + P
Sbjct: 96 AGTKQSTCILICAPAPTPVPGAKSAVASPAPPQTPVGPSAP 136
>Z81564-6|CAB04572.1| 678|Caenorhabditis elegans Hypothetical
protein K05C4.6 protein.
Length = 678
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -1
Query: 293 TQNPGAVCVPFQLTAIV--IEKLPGVSSFTE*SIVILSECTEYFSVA 159
T+N VC + A+V I +LP V TE ++ L CT S+A
Sbjct: 362 TRNKQTVCSHGGIDALVTAIRRLPEVEEVTEPALCALRHCTARHSLA 408
>Z81080-3|CAD30439.1| 608|Caenorhabditis elegans Hypothetical
protein F39H2.5 protein.
Length = 608
Score = 27.5 bits (58), Expect = 7.1
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Frame = -1
Query: 521 VLEL-TLERRIRRARVPEC*VIRQLISEGSCQSSTHRLHLPTGLVFRLFAC*YQGQRLHS 345
++EL +LE +R+ Q +G+ S LP G+VFR C + L +
Sbjct: 522 IIELASLENAGKRSEEDHTVEKTQSTIQGTPISQLQEDPLPPGVVFRTNTCDFMDMDLDN 581
Query: 344 Y*SNPTGPPK-FDGVACRTQN 285
+ P GPPK F R N
Sbjct: 582 W---PEGPPKTFAEAIARANN 599
>U58757-9|AAM75377.1| 503|Caenorhabditis elegans Hypothetical
protein C01B10.6b protein.
Length = 503
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Frame = -2
Query: 295 GPKTLVPYA-CPSNLPRSSLKNCRVYPALPNNPSSFCPSVPNTFPLPM 155
G L PY C N+ +C P + P CP T P P+
Sbjct: 364 GQNALSPYGVCYKNICSDQCFSCACSPGAKSPPDQSCPKPSPTDPTPV 411
>U58757-8|AAC47918.3| 506|Caenorhabditis elegans Hypothetical
protein C01B10.6a protein.
Length = 506
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Frame = -2
Query: 295 GPKTLVPYA-CPSNLPRSSLKNCRVYPALPNNPSSFCPSVPNTFPLPM 155
G L PY C N+ +C P + P CP T P P+
Sbjct: 367 GQNALSPYGVCYKNICSDQCFSCACSPGAKSPPDQSCPKPSPTDPTPV 414
>U34661-1|AAA92006.1| 962|Caenorhabditis elegans ionotropic
glutamate receptor subunitprotein.
Length = 962
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +2
Query: 500 VPRSIPARFLKRMWWFLNFII 562
+PRSI R WWF II
Sbjct: 657 LPRSISGRIASSAWWFFTMII 677
>L16559-2|AAA27933.3| 962|Caenorhabditis elegans Glutamate receptor
family (ampa)protein 1 protein.
Length = 962
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +2
Query: 500 VPRSIPARFLKRMWWFLNFII 562
+PRSI R WWF II
Sbjct: 657 LPRSISGRIASSAWWFFTMII 677
>AF016853-1|AAB94552.1| 678|Caenorhabditis elegans HMP-2 protein.
Length = 678
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -1
Query: 293 TQNPGAVCVPFQLTAIV--IEKLPGVSSFTE*SIVILSECTEYFSVA 159
T+N VC + A+V I +LP V TE ++ L CT S+A
Sbjct: 362 TRNKQTVCSHGGIDALVTAIRRLPEVEEVTEPALCALRHCTARHSLA 408
>U49831-8|AAA93409.2| 280|Caenorhabditis elegans Hypothetical
protein F10C1.5 protein.
Length = 280
Score = 27.1 bits (57), Expect = 9.4
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = -2
Query: 325 GLRSSTVSPAGPKTLVPYACPSNLPRSSLKNCRVYPALPNNPSSFCPSVPNTFPL 161
G RSS SP G +T+V + P L S N +P +P F P+ ++ P+
Sbjct: 141 GQRSSPSSPTGSETVVSTSSPPELSSESTPNTS-GSVIPTSP-VFKPNGYSSMPM 193
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,054,493
Number of Sequences: 27780
Number of extensions: 365935
Number of successful extensions: 1083
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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