Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_I22
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    31   0.13 
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    29   0.68 
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   2.8  
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub...    27   2.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.8  
SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family...    27   2.8  
SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces p...    27   3.6  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    27   3.6  
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy...    26   6.4  
SPBP8B7.31 |||acid phosphatase |Schizosaccharomyces pombe|chr 2|...    25   8.4  
SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr ...    25   8.4  

>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +3

Query: 54  TFSDNALRSAHRLGLSRPLED-LSFHQSRLT 143
           TF++NAL   H LGL +   D L+ H+SRL+
Sbjct: 317 TFTNNALLCCHELGLHKDFSDVLTSHESRLS 347


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +1

Query: 136 GSQPLQPSAPVAAPLYSAPPGYPGVQA 216
           G  P+ P  P   P     PGYPG+ A
Sbjct: 508 GPMPMYPGMPTQFPAGGPAPGYPGMNA 534


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = -1

Query: 504 PTGESSWWDISTMRGHPVVRATYENLVIRFAMFKTTPWY 388
           P  + ++ +IS  + H V+R   E + + + M     WY
Sbjct: 179 PISQKNYQEISIWKSHDVIRVKQEVVELIYVMRSLVQWY 217


>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 804

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -2

Query: 572 LPVVTLPSCRTRPTNRGSPSSVSPPGKAPGGILA-PC-VGTQLLG 444
           LP+   PS + RP    S S +   G+A  GI+  PC  G  L+G
Sbjct: 314 LPIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 358


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 145 PLQPSAPVAAPLYSAPPGYP 204
           PL PSAP+A PL +  P  P
Sbjct: 448 PLPPSAPIAPPLPAGMPAAP 467


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -2

Query: 557  LPSCRTRPTNRGSPSSVSPPGKAPGGILAPCVGTQLLGPPT 435
            LP+  TRP+N G  +S  P   AP  I  P   + +L  PT
Sbjct: 944  LPTKLTRPSNDGRKAS-GPRPAAPPSIPPPLPVSNILSSPT 983


>SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 29  SLWSGWIPYLFR*RTSECAQAGALKATGGS 118
           +L   W P LFR ++  CA+ G +  TGGS
Sbjct: 16  ALTLSWFPLLFRKQSYSCAK-GLIVITGGS 44


>SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 101

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +3

Query: 60  SDNALRSAHRLGLSRPLEDLSFHQSRLTATATVRSSGCST 179
           S NAL    R    RPL++LS    + + T TV+ S  ST
Sbjct: 21  SSNALYRVQRPLQRRPLQELSIELVKPSQTITVKKSKKST 60


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 154 PSAPVAAPLYSAPPGYPGVQAHPGGG 231
           P+A + A +   P GYPG    P GG
Sbjct: 134 PNAGIPAAMPGMPSGYPGTVPIPQGG 159


>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 385 YIPWGGLEHGKPNY 426
           Y+ WGGLE  KP+Y
Sbjct: 72  YLYWGGLEGKKPHY 85


>SPBP8B7.31 |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 177

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 728 YRRLM**FYK*DSRSRSVERYNKTYCM 648
           YR ++  F+  +SR+R VER   T+C+
Sbjct: 129 YREMV--FFDDESRNREVERLGVTFCL 153


>SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 451

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 19/63 (30%), Positives = 24/63 (38%)
 Frame = -2

Query: 575 TLPVVTLPSCRTRPTNRGSPSSVSPPGKAPGGILAPCVGTQLLGPPTRIW*LGLPCSRPP 396
           TL   T+ SC    T   + S +     A   I   C+   L  P  R W L L C +  
Sbjct: 297 TLGDPTIESCWNIGTLSSTISCLDTNFLAIKDIFIACIRRSLAYPLYRNWDLALTCWKDT 356

Query: 395 HGI 387
           H I
Sbjct: 357 HAI 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,281,741
Number of Sequences: 5004
Number of extensions: 73507
Number of successful extensions: 226
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)