Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_I17
(682 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1334 - 26224546-26225337 31 1.1
09_04_0430 + 17502387-17503505 30 1.5
04_04_1104 - 30928475-30928501,30929008-30929110,30929287-309293... 30 2.0
03_02_0155 - 5974118-5974173,5974242-5974314,5974393-5974500,597... 30 2.0
02_03_0167 - 15923872-15925683 30 2.0
03_02_0719 + 10654842-10654977,10655039-10655124,10655226-106570... 29 2.6
01_07_0213 - 42028941-42029055,42029444-42029480,42029876-420302... 29 2.6
09_06_0310 - 22212348-22212695,22213561-22213766,22213796-222139... 29 3.4
07_01_0860 - 7142913-7144895 29 3.4
06_03_0310 - 19453047-19453160,19453240-19453338,19453441-194535... 29 3.4
04_03_0589 - 17604361-17604800,17604887-17604949,17605025-176052... 29 3.4
02_03_0388 + 18429538-18430598,18430971-18431081,18431165-184312... 29 3.4
01_06_1246 - 35703119-35703811,35704033-35704074,35704355-357045... 29 3.4
04_03_0720 - 19008890-19009204,19009324-19009593 29 4.5
11_06_0446 - 23703088-23703681 28 6.0
06_03_0073 + 16229369-16230115,16230182-16230431,16230618-162307... 28 6.0
02_05_1260 + 35299795-35299905,35300065-35300112,35301181-35302356 28 6.0
11_06_0610 - 25449085-25453284 28 7.9
11_06_0598 - 25391923-25393197 28 7.9
02_05_0512 + 29675835-29675901,29676681-29676813,29677020-296771... 28 7.9
>08_02_1334 - 26224546-26225337
Length = 263
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -1
Query: 172 VQIPS-TSSSPAPREMPSGTPPMRLPFITPPNAND 71
V +P+ +++P P P TPP +LP ++PP +
Sbjct: 113 VSLPAPVTATPPPPPPPPETPPRQLPSVSPPTVGE 147
>09_04_0430 + 17502387-17503505
Length = 372
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -1
Query: 163 PSTSSSPAPREMPSGTPPMRLPFITPPNA 77
P+ P P+ P TPP P TPP A
Sbjct: 160 PAPMQQPQPQPPPQPTPPRAAPLPTPPRA 188
>04_04_1104 -
30928475-30928501,30929008-30929110,30929287-30929340,
30929803-30929895,30930063-30930140,30930416-30930527,
30930618-30930756,30930823-30930910,30930984-30931079,
30931675-30931781,30931874-30932009,30932089-30932186,
30932954-30933047,30933132-30933301,30933749-30933819,
30936066-30936194,30936552-30936654,30936764-30936907,
30937123-30937245,30937482-30937563,30939044-30939120,
30939261-30939315,30939365-30939443,30939544-30939620,
30939739-30939869,30939947-30940120,30940245-30940310,
30940937-30941572
Length = 1113
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -1
Query: 166 IPSTSSSPAPREMPSGTPPMRLPFITPP-NANDVVSDLVMANNDKITIFENIS 11
+P+ + AP+ +P PM LP PP N+V D+ ++ T+ E +
Sbjct: 180 VPTPGMTQAPQMVPGALIPMVLPITDPPEEINEVAIDVEREEDEGGTVGETFT 232
>03_02_0155 -
5974118-5974173,5974242-5974314,5974393-5974500,
5975189-5976914,5977065-5977620,5978008-5978485
Length = 998
Score = 29.9 bits (64), Expect = 2.0
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -1
Query: 283 LHVVPSMHCSRGTFNHP-PGKSTQVTA*VQFWQATPD*VQIPSTSSSPAPREMPSGTPPM 107
+H +P + RG P PG +Q +QA P +P + P PR PS P
Sbjct: 26 MHQMPMLPQQRGYAQMPMPGPPSQPPPPQAMYQAHPQ-YPMPGSLPPPPPRP-PSFAPEN 83
Query: 106 RLPFITPP 83
LP +PP
Sbjct: 84 ALPPSSPP 91
>02_03_0167 - 15923872-15925683
Length = 603
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = -1
Query: 517 LIEHWAV*GLYP*CLGHKATLWSAGLPSG 431
LI+H A G Y CL H A+L +AGL G
Sbjct: 22 LIQHAAASGSYSRCLRHYASLLAAGLGGG 50
>03_02_0719 +
10654842-10654977,10655039-10655124,10655226-10657001,
10657782-10657926,10658017-10658735
Length = 953
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 339 DHESYTPAQVAQSTCLNERCMSSPQC 262
+HE +P V + T LNE C SS C
Sbjct: 684 EHEDLSPLSVLEPTFLNESCWSSDCC 709
>01_07_0213 -
42028941-42029055,42029444-42029480,42029876-42030244,
42030332-42031201,42051574-42052891
Length = 902
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -1
Query: 232 PGKSTQVTA*VQFWQATPD*VQIPSTSSSPAPREMPSGTPPMRLP 98
P KS + +QFWQ P Q+PS+++ P S P ++ P
Sbjct: 572 PDKSAASGSAIQFWQPPP---QLPSSAAGGNPNPSSSAFPYLKKP 613
>09_06_0310 -
22212348-22212695,22213561-22213766,22213796-22213905,
22214351-22214427,22214466-22214486,22214518-22215651
Length = 631
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Frame = -1
Query: 163 PSTSSSPAP----REMPSGTPPMRLPFITPPN--ANDVVSDLVMANNDKITIFENISHQN 2
PS ++SPAP ++ SG P + + N +D++S + AN D+ E + H+N
Sbjct: 118 PSAAASPAPLPTSQKYSSGLPAIAYGVLKRANDIVDDLLSQIDAANRDRDRAREQMEHRN 177
>07_01_0860 - 7142913-7144895
Length = 660
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/28 (57%), Positives = 17/28 (60%)
Frame = -1
Query: 187 ATPD*VQIPSTSSSPAPREMPSGTPPMR 104
ATPD +PSTSSS A E TPP R
Sbjct: 632 ATPDLASLPSTSSSVANTE-AMATPPRR 658
>06_03_0310 -
19453047-19453160,19453240-19453338,19453441-19453513,
19453598-19453708,19453795-19453956,19454064-19454340,
19454542-19455160,19455256-19455471
Length = 556
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 163 PSTSSSPAPREMPSGTPPMRLPFITPPNA 77
P + +P P + P+ TPP R P TPP A
Sbjct: 175 PPQAPAPTPPQAPAPTPP-RAPTPTPPQA 202
>04_03_0589 -
17604361-17604800,17604887-17604949,17605025-17605280,
17605373-17605634,17605739-17605885,17606118-17606236,
17606373-17606531,17606911-17606947,17607023-17607174
Length = 544
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Frame = -1
Query: 172 VQIPSTSSSPAPR-EMPSGTPPM----RLPFITPPNA 77
VQ P +SP P +P TPP+ R PF TPP++
Sbjct: 353 VQRPPVPTSPRPAAHVPRPTPPLHGGFRAPFSTPPSS 389
>02_03_0388 +
18429538-18430598,18430971-18431081,18431165-18431237,
18431513-18431695
Length = 475
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -1
Query: 163 PSTSSSPAPREMPSGTPPMRLPFITPPNA 77
P +S+P+P P+ +PP + P +TPP A
Sbjct: 83 PPQASAPSPPHAPAPSPP-QAPAMTPPQA 110
>01_06_1246 -
35703119-35703811,35704033-35704074,35704355-35704576,
35705077-35705466,35705560-35705637
Length = 474
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -1
Query: 163 PSTSSSPAPREMPSGTPPMRLPFIT 89
P+ SS P R+ PS TPP R+P +T
Sbjct: 318 PNKSSRPPSRQSPS-TPPSRVPSVT 341
>04_03_0720 - 19008890-19009204,19009324-19009593
Length = 194
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 547 PAPQCGKVGQYGVLPTSPQHYYVCLQKNRRLYP 645
P P+ KV ++GVLP + Y+ C+ + P
Sbjct: 54 PEPEPEKVARHGVLPLLGKPYFTCIMCKSHVQP 86
>11_06_0446 - 23703088-23703681
Length = 197
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Frame = +3
Query: 285 AHLGKCSEQPVPECNFHDQQFRHTCEQV---GIFPDAVDCRKF 404
AH +P + N H QQF C GI PDAV R F
Sbjct: 40 AHASPFCAKPNKDANAHLQQFLEICSTYIVKGISPDAVRLRLF 82
>06_03_0073 +
16229369-16230115,16230182-16230431,16230618-16230728,
16230768-16231153
Length = 497
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Frame = +3
Query: 309 QPVPECNFHDQQFRHTCEQV---GIFPDAVDCRKF 404
+P + N H QQF TC G+ PDAV R F
Sbjct: 95 KPNEDANAHLQQFLETCSMYTIKGVSPDAVRLRLF 129
>02_05_1260 + 35299795-35299905,35300065-35300112,35301181-35302356
Length = 444
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 166 IPSTSSSPAPREMPSGTPPMRLPFITPPNA 77
+P + +P P E+P PP PF+ PP++
Sbjct: 86 LPPRTDAPMP-EIPIHPPPPVFPFVAPPSS 114
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = -1
Query: 184 TPD*VQIPSTSSSPAPREMPSGTPPMRLPFITPPNA 77
TP+ PS S P P P +PP ++ P A
Sbjct: 902 TPESSSPPSKESEPPPTPTPKSSPPSHEEYVPPSPA 937
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = -1
Query: 184 TPD*VQIPSTSSSPAPREMPSGTPPMRLPFITPPNA 77
TP+ PS S P P P +PP ++ P A
Sbjct: 952 TPESSSPPSEESEPPPSPTPKSSPPSHEEYVPPSPA 987
>11_06_0598 - 25391923-25393197
Length = 424
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = -1
Query: 148 SPAPREMPSGTPPM-RLPFITPPNANDVVSDLV 53
SPA E+PSGT M RL ++ +A++ V+DL+
Sbjct: 162 SPATVELPSGTRRMERLEILSHVDASNNVNDLI 194
>02_05_0512 +
29675835-29675901,29676681-29676813,29677020-29677164,
29677586-29678407
Length = 388
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +2
Query: 35 FIVIRHH*IANDIVSVWWRDEWQPHGWS-ATWHLPR 139
F+ +R + D S WW + P WS + W PR
Sbjct: 134 FLKLRFSRLNTDCTSSWWNADRSPPWWSPSRWCCPR 169
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,243,531
Number of Sequences: 37544
Number of extensions: 517858
Number of successful extensions: 1728
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1718
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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