Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_I16
(464 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 65 4e-12
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 57 1e-09
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 55 6e-09
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 54 1e-08
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 52 4e-08
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 49 4e-07
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 48 5e-07
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 48 7e-07
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 48 7e-07
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 46 2e-06
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 46 3e-06
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 46 3e-06
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 46 4e-06
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 44 1e-05
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 42 4e-05
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 42 6e-05
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 41 8e-05
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 40 1e-04
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 39 4e-04
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 39 4e-04
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 38 8e-04
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 36 0.004
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 33 0.021
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 27 1.4
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 26 2.5
SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces pombe... 26 3.3
SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces... 25 7.5
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p... 24 9.9
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 65.3 bits (152), Expect = 4e-12
Identities = 25/40 (62%), Positives = 34/40 (85%)
Frame = +2
Query: 332 DVDGIQYVINFDYPNSSEDYIHRIGRTGRSKAKGTSYAFF 451
DV GI +V N+D+P ++EDY+HRIGRTGR+ AKGT+Y +F
Sbjct: 434 DVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYF 473
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 57.2 bits (132), Expect = 1e-09
Identities = 23/42 (54%), Positives = 30/42 (71%)
Frame = +2
Query: 332 DVDGIQYVINFDYPNSSEDYIHRIGRTGRSKAKGTSYAFFNP 457
D+ +Q VIN +P + EDY+HRIGRTGR+ KGT+ FF P
Sbjct: 481 DIPKVQLVINVTFPLTIEDYVHRIGRTGRANTKGTAITFFTP 522
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 54.8 bits (126), Expect = 6e-09
Identities = 21/44 (47%), Positives = 29/44 (65%)
Frame = +2
Query: 332 DVDGIQYVINFDYPNSSEDYIHRIGRTGRSKAKGTSYAFFNPSK 463
DV +Q V+N+D PN EDY+HR+GRTGR+ G + F P +
Sbjct: 733 DVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPEQ 776
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 54.0 bits (124), Expect = 1e-08
Identities = 21/41 (51%), Positives = 29/41 (70%)
Frame = +2
Query: 332 DVDGIQYVINFDYPNSSEDYIHRIGRTGRSKAKGTSYAFFN 454
D+ + +VIN+D P +DY+HRIGRTGR+ G + AFFN
Sbjct: 495 DIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGQAVAFFN 535
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 52.0 bits (119), Expect = 4e-08
Identities = 22/40 (55%), Positives = 27/40 (67%)
Frame = +2
Query: 332 DVDGIQYVINFDYPNSSEDYIHRIGRTGRSKAKGTSYAFF 451
D G++ VINFD+P S YIHRIGRTGR+ G + FF
Sbjct: 353 DFHGVKMVINFDFPQSVHSYIHRIGRTGRAGNTGQAVTFF 392
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 48.8 bits (111), Expect = 4e-07
Identities = 18/41 (43%), Positives = 29/41 (70%)
Frame = +2
Query: 332 DVDGIQYVINFDYPNSSEDYIHRIGRTGRSKAKGTSYAFFN 454
D+ + VINFD+P ++E Y+HRIGR+GR +G + +F +
Sbjct: 346 DIQAVNVVINFDFPKNAETYLHRIGRSGRFGHRGLAISFIS 386
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 48.4 bits (110), Expect = 5e-07
Identities = 20/51 (39%), Positives = 32/51 (62%)
Frame = +2
Query: 305 RPYNI*MFTDVDGIQYVINFDYPNSSEDYIHRIGRTGRSKAKGTSYAFFNP 457
+ Y + D + + V+NFD P++++ YIHRIGRT R+ GT+ +F P
Sbjct: 382 KEYGVARGLDFENVACVLNFDMPSNTKSYIHRIGRTARAGKPGTAMSFVVP 432
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 48.0 bits (109), Expect = 7e-07
Identities = 19/36 (52%), Positives = 24/36 (66%)
Frame = +2
Query: 332 DVDGIQYVINFDYPNSSEDYIHRIGRTGRSKAKGTS 439
D+ +Q VINFD P +DYIHR+GRT R+ G S
Sbjct: 323 DIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGES 358
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 48.0 bits (109), Expect = 7e-07
Identities = 19/42 (45%), Positives = 26/42 (61%)
Frame = +2
Query: 332 DVDGIQYVINFDYPNSSEDYIHRIGRTGRSKAKGTSYAFFNP 457
D+ + V+N++ S EDY HRIGRTGR+ GT+ F P
Sbjct: 581 DIPNVSLVLNYNMAKSIEDYTHRIGRTGRAGKSGTAITFLGP 622
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 46.4 bits (105), Expect = 2e-06
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = +2
Query: 332 DVDGIQYVINFDYPNSSEDYIHRIGRTGRSKAKGTSYAF 448
D++ + VIN+D P+S + Y+HR+GR GR KG + F
Sbjct: 360 DIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGLAITF 398
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 46.0 bits (104), Expect = 3e-06
Identities = 21/39 (53%), Positives = 25/39 (64%)
Frame = +2
Query: 332 DVDGIQYVINFDYPNSSEDYIHRIGRTGRSKAKGTSYAF 448
DV + VIN+D P + E+YIHRIGR GR KG S F
Sbjct: 323 DVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVSINF 361
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 46.0 bits (104), Expect = 3e-06
Identities = 20/39 (51%), Positives = 26/39 (66%)
Frame = +2
Query: 332 DVDGIQYVINFDYPNSSEDYIHRIGRTGRSKAKGTSYAF 448
DV + VIN+D P + E+YIHRIGR+GR KG + F
Sbjct: 325 DVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINF 363
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 45.6 bits (103), Expect = 4e-06
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +2
Query: 332 DVDGIQYVINFDYPNSSEDYIHRIGRTGR-SKAKGTSYAFFNPSK 463
D+ + +++ +D P+ DYIHR+GRT R +K G S F PS+
Sbjct: 401 DIPAVDWIVQYDPPDDPRDYIHRVGRTARGTKGTGKSLMFLAPSE 445
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 44.0 bits (99), Expect = 1e-05
Identities = 17/44 (38%), Positives = 27/44 (61%)
Frame = +2
Query: 332 DVDGIQYVINFDYPNSSEDYIHRIGRTGRSKAKGTSYAFFNPSK 463
D+ + V+ +D P S++DY+HRIGRT R+ G + F P +
Sbjct: 511 DLPNVDLVVQYDAPFSTDDYLHRIGRTARAGHNGAAIMFLLPKE 554
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 42.3 bits (95), Expect = 4e-05
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = +2
Query: 332 DVDGIQYVINFDYPNSSEDYIHRIGRTGRSKAKGTSYA 445
D+ + VIN+D P S+ YIHR+GRT R+ G S A
Sbjct: 350 DIPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIA 387
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 41.5 bits (93), Expect = 6e-05
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +2
Query: 332 DVDGIQYVINFDYPNSSEDYIHRIGRTGRSKAKG 433
D+ GI+ VIN++ P + E Y+HR+GRT R+ G
Sbjct: 569 DIKGIEVVINYEAPATHEVYLHRVGRTARAGRSG 602
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 41.1 bits (92), Expect = 8e-05
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +2
Query: 332 DVDGIQYVINFDYPNSSEDYIHRIGRTGRSKAKGTSY 442
D I V+ P++++DYIHRIGRTGR+ G +Y
Sbjct: 358 DFPNITQVVQITGPSNTDDYIHRIGRTGRAGKTGEAY 394
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 40.3 bits (90), Expect = 1e-04
Identities = 18/37 (48%), Positives = 24/37 (64%)
Frame = +2
Query: 332 DVDGIQYVINFDYPNSSEDYIHRIGRTGRSKAKGTSY 442
DV Q VIN+D P S Y+HRIGRT R+ +G ++
Sbjct: 502 DVANTQNVINYDPPLSVRSYVHRIGRTARAGREGFAW 538
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 38.7 bits (86), Expect = 4e-04
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +2
Query: 332 DVDGIQYVINFDYPNSSEDYIHRIGRTGRSKAKGTSYAFFNPSK 463
D+ + +VI++ P++++ Y+HR GRT R+ G S P +
Sbjct: 454 DIPSVTHVIHYHVPHTADMYVHRSGRTARANEDGVSILMCGPKE 497
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 38.7 bits (86), Expect = 4e-04
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 332 DVDGIQYVINFDYPNSSEDYIHRIGRTGRSKAKGTSYAFFNPSK 463
D + +VI D P + YIHR+GRT R G + PS+
Sbjct: 350 DFPAVDWVIQLDAPEDVDTYIHRVGRTARYNRSGNALLLLLPSE 393
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 37.9 bits (84), Expect = 8e-04
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = +2
Query: 332 DVDGIQYVINFDYPNSSEDYIHRIGRTGRSKAKGTSYA 445
D+ + VIN+D+P + ++HR+GRT R+ G +Y+
Sbjct: 411 DIPLLANVINYDFPPQPKVFVHRVGRTARAGRTGWAYS 448
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 35.5 bits (78), Expect = 0.004
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Frame = +2
Query: 332 DVDGIQYVINFDYPNSS------EDYIHRIGRTGRSKAKGTSYAFFNPSK 463
DV + V+N+D P + Y+HRIGRTGR G S F + K
Sbjct: 417 DVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKK 466
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 33.1 bits (72), Expect = 0.021
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +2
Query: 332 DVDGIQYVINFDYPNSSEDYIHRIGRTGRSKAKGTSYAFFNPSK 463
D+ + +V+ D P + + HR GR GR+ G + N +
Sbjct: 324 DIPNVDFVLQLDPPLDPKSFSHRCGRAGRAGRAGVAIVLLNDGR 367
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 27.1 bits (57), Expect = 1.4
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +2
Query: 332 DVDGIQYVINFDYPNSSEDYIHRIGRTGRSKAKGTSYAFFNPSK 463
D+ + +I +D S + R+GRTGR K KG Y K
Sbjct: 507 DIGEVDMIICYDASASPIRMLQRMGRTGR-KRKGYIYMLLTRGK 549
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 26.2 bits (55), Expect = 2.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 332 DVDGIQYVINFDYPNSSEDYIHRIGRTGRSKA 427
D+ +I +D +S I R+GRTGR K+
Sbjct: 546 DIGDTDMIICYDASSSPIRTIQRMGRTGRKKS 577
>SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 264
Score = 25.8 bits (54), Expect = 3.3
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -2
Query: 352 ILDSIHIGKHLYIIWSINL 296
+L +H+ HL+ +W INL
Sbjct: 169 LLGRVHLSYHLFALWVINL 187
>SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 350
Score = 24.6 bits (51), Expect = 7.5
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = +2
Query: 335 VDGIQYVINFDYPNSSEDYIHRIGRTGRSKAKGTS 439
+D + I YP S EDY + R SK S
Sbjct: 148 IDNLSMPIQLAYPTSPEDYAYLRLRRNTSKKSSLS 182
>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 489
Score = 24.2 bits (50), Expect = 9.9
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = +2
Query: 347 QYVINFDYPNSSED 388
+Y++NFD PN D
Sbjct: 370 EYILNFDIPNGKSD 383
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,103,434
Number of Sequences: 5004
Number of extensions: 45515
Number of successful extensions: 104
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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