Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_I15
(414 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch... 149 2e-37
SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein L32|Schizosac... 146 9e-37
SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1 |Sc... 26 2.0
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 26 2.0
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 25 4.7
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S... 25 4.7
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb... 25 4.7
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 25 6.1
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte... 25 6.1
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch... 24 8.1
>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
L32|Schizosaccharomyces pombe|chr 1|||Manual
Length = 127
Score = 149 bits (361), Expect = 2e-37
Identities = 67/117 (57%), Positives = 91/117 (77%)
Frame = +2
Query: 2 RTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPSGFR 181
RTK F RHQSDR+ ++ +WRKPRGID+ VRRRF+G MP IGYG+NKKTR+ +P+G +
Sbjct: 10 RTKPFKRHQSDRFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMPNGLK 69
Query: 182 KVLVHNVRELEILMMQNRKYCAEIAHGVSSKKRKAIVERAQQLSIRVTNAAARLRSQ 352
LV NV ++E+L+M N+ Y AEIA VS++KR IVE+A+ L ++VTNA A++RSQ
Sbjct: 70 AFLVRNVSDVELLLMHNKTYAAEIAGNVSARKRVEIVEKARALGVKVTNAGAKVRSQ 126
>SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein
L32|Schizosaccharomyces pombe|chr 2|||Manual
Length = 127
Score = 146 bits (355), Expect = 9e-37
Identities = 66/117 (56%), Positives = 90/117 (76%)
Frame = +2
Query: 2 RTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPSGFR 181
RTK F RHQSD + ++ +WRKPRGID+ VRRRF+G MP IGYG+NKKTR+ +P+G +
Sbjct: 10 RTKPFKRHQSDLFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMPNGLK 69
Query: 182 KVLVHNVRELEILMMQNRKYCAEIAHGVSSKKRKAIVERAQQLSIRVTNAAARLRSQ 352
LV NV ++E+L+M N+ Y AEIA VS++KR IVE+A+ L ++VTNA A++RSQ
Sbjct: 70 AFLVRNVSDVELLLMHNKTYAAEIASNVSARKRVEIVEKARALGVKVTNAGAKVRSQ 126
>SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 215
Score = 26.2 bits (55), Expect = 2.0
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -3
Query: 406 FFF*NKNIDYILYNLFILLGTETSGR 329
+FF NKN+ +LY LG E SGR
Sbjct: 157 YFFFNKNMKRMLYLSLHGLGKEVSGR 182
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 26.2 bits (55), Expect = 2.0
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 278 VFSRRRHVRFPRSISCSASSGSPVRERCGP 189
VFS R++RF S S S SP + GP
Sbjct: 1296 VFSMLRYIRFHNSKQSSKHSPSPTLKSVGP 1325
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 25.0 bits (52), Expect = 4.7
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +2
Query: 14 FIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 139
F H D YD+L NW++ ++ +RFK NI G
Sbjct: 822 FCVHTRDVYDELVPNWKETYQMEITNVKRFKLIIYQRNIHTG 863
>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
Atm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 693
Score = 25.0 bits (52), Expect = 4.7
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +2
Query: 29 SDRYDKLKRN-WRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPSGFRKVLVHNVR 205
+ R D++ N RK G+ + F L NIGYG+ K + + +K +H++
Sbjct: 504 NQRLDQITLNSLRKAIGVVPQDTPLFNDTILY-NIGYGNPKASNDEIVEAAKKAKIHDII 562
Query: 206 E 208
E
Sbjct: 563 E 563
>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 923
Score = 25.0 bits (52), Expect = 4.7
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = -3
Query: 349 GTETSGRVGHPDAEL-LGTLDYSL--PFFRGDAMCDFRAVFPVLH 224
G + +G G+PDAEL + + ++ PFFR A D + P L+
Sbjct: 627 GADVAGFFGNPDAELFVRWYETAIFYPFFRAHAHIDTKRREPWLY 671
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 24.6 bits (51), Expect = 6.1
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Frame = +3
Query: 168 PAVFVKSWSTTFANWR---S**CRTGNTARKSHM 260
P V +W T ANW + C TGNT ++++
Sbjct: 447 PLSTVPAWQETLANWTPDLNSICYTGNTESRANI 480
>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 531
Score = 24.6 bits (51), Expect = 6.1
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -3
Query: 112 LTLEAPTYSVVDTSRFTPVPLKFIITIRLVTNKSFRP 2
+T+ A Y V+ + +I+T L+TN +F+P
Sbjct: 48 MTIVASLYPVIGSEFKLMNNASYIVTAYLITNTAFQP 84
>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 24.2 bits (50), Expect = 8.1
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -2
Query: 215 SPVRERCGPRLYENRWVACDGSSY-LNHNQCWASS 114
SP RE C + + AC+G+S+ L H ASS
Sbjct: 28 SPEREYCSDCPLQAKGSACNGNSHSLKHETNGASS 62
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,703,977
Number of Sequences: 5004
Number of extensions: 34256
Number of successful extensions: 93
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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