Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_I14
         (436 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c...    28   0.54 
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    25   3.8  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   5.0  
SPBC582.07c |rpn7||19S proteasome regulatory subunit Rpn7|Schizo...    24   8.8  
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||...    24   8.8  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    24   8.8  
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S...    24   8.8  

>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 28.3 bits (60), Expect = 0.54
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +2

Query: 257 DQYLNIWAGYTLRTIHLNIS*GAAGAL--VIYPVLCK 361
           + ++ +W GYT+    L I+ G AGA+  + +PVL +
Sbjct: 88  EAWITVWVGYTIAAFILTIA-GRAGAVYHISFPVLSR 123


>SPBC215.08c |arg4||carbamoyl-phosphate synthase
           Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +1

Query: 223 HKCLEKYDVKPGPVPKHMGWLYTANDSPEHQL 318
           H  ++K D      P H  +LYT+ ++  H +
Sbjct: 593 HPWVKKIDTLAAEFPAHTNYLYTSYNASSHDI 624


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -1

Query: 310 VQVNRSQCITSPYV 269
           +Q N+SQ +TSPYV
Sbjct: 54  IQPNKSQSVTSPYV 67


>SPBC582.07c |rpn7||19S proteasome regulatory subunit
           Rpn7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 409

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 334 GASRTLADVQVNRSQC 287
           G  RTLADV+VN  +C
Sbjct: 284 GFFRTLADVEVNHLKC 299


>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 203

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +2

Query: 266 LNIW--AGYT-LRTIHLNIS*GAAGALVIYPVLCKEESNNI 379
           L IW  AG    RTI  +   GA G +++Y V  ++  NN+
Sbjct: 59  LQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNV 99


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1337

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -1

Query: 262  LVPA*HHISLSIYAWEDRSALSNLLRIYWISHRQVYSNMPSLWL 131
            LV   + +  +I   EDR   + L R+ W+ H+ V   +  L++
Sbjct: 1172 LVDLLNSLMTTITTLEDRWLFALLYRVGWLDHKFVADQLAVLYM 1215


>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = -1

Query: 412 DSDYILQLSPSYVVRFFFTQNRIYDQ---GASRTLADVQ 305
           ++DY+ +L   Y +RFF   +R YD       RTL D++
Sbjct: 106 ETDYLFRLCKDYDLRFFVIADR-YDNEKYKKHRTLEDLK 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,855,185
Number of Sequences: 5004
Number of extensions: 38561
Number of successful extensions: 75
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)