Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_I14
         (436 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0199 + 21162886-21163240,21163836-21163879                       29   2.2  
08_01_0774 + 7482311-7482919,7484012-7484077,7484211-7484384,748...    28   2.9  
04_04_0191 + 23468410-23468455,23468560-23468699,23469119-234692...    28   3.8  
11_01_0538 + 4265540-4265896                                           27   5.0  
07_03_1207 - 24881074-24881906,24882204-24882285,24882921-24882926     27   5.0  
02_03_0252 - 16882960-16884106,16884173-16884518,16892586-16892724     27   6.6  
04_03_0051 + 10199702-10199839,10199869-10200642,10202481-102030...    27   8.7  
01_01_0563 + 4142351-4144510,4145610-4147259,4147942-4148185,414...    27   8.7  

>11_06_0199 + 21162886-21163240,21163836-21163879
          Length = 132

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -2

Query: 210 AAP*ATC*GFIGFPTARFTATCHLYGYNILLSC-VDIMVDRAFSL 79
           AAP   C G            CH+  + +  +  VDI VDRAF+L
Sbjct: 53  AAPEGCCAGLSSIVKGEAVCLCHIVNHTLERAIGVDIPVDRAFAL 97


>08_01_0774 +
           7482311-7482919,7484012-7484077,7484211-7484384,
           7484473-7484603,7484726-7484802,7484981-7485064,
           7487885-7488066,7488189-7488266,7489813-7489945,
           7491610-7491670,7491861-7491942,7492143-7492271,
           7492510-7492653,7493102-7493204,7493382-7493513,
           7494127-7494485,7495149-7495229,7495384-7495450,
           7495636-7495706,7496087-7496178,7496365-7496458,
           7497692-7497789,7498206-7498341,7498599-7498618,
           7498781-7498876,7498973-7499060,7499171-7499288,
           7499738-7499759,7500203-7500326,7500625-7500702,
           7500837-7500955,7501816-7501869,7502260-7502362,
           7503133-7503261,7503345-7503453,7503788-7503819
          Length = 1424

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 226 YAWEDRSALSNLLRIYWISHRQVYSNM 146
           Y  ED+   S + R+YW SH++ + +M
Sbjct: 582 YYAEDKGNSSQIWRLYWASHQRFFRHM 608


>04_04_0191 +
           23468410-23468455,23468560-23468699,23469119-23469201,
           23469346-23469550,23469632-23469735,23470290-23470449
          Length = 245

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = +2

Query: 251 SRDQYLNIW--AGY-TLRTIHLNIS*GAAGALVIYPVLCKEESNNI 379
           SR   L IW  AG  + R+I  +   GAAGAL++Y +  +E  N++
Sbjct: 52  SRPVKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL 97


>11_01_0538 + 4265540-4265896
          Length = 118

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = +1

Query: 148 CCCKPGGGKSNKSSASCLGRCDLPRHKC 231
           CCC PG     +  A C  R    R KC
Sbjct: 56  CCCPPGSATLCRPLAGCRSRIPACRIKC 83


>07_03_1207 - 24881074-24881906,24882204-24882285,24882921-24882926
          Length = 306

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 15/41 (36%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
 Frame = +1

Query: 241 YDVKPGPVPK--HMGWLYTANDSPEHQLRCGWRPGHISCSV 357
           Y V P P     H GW Y       HQ +C   P    CSV
Sbjct: 265 YGVAPPPAAPYDHQGWYYGNRQPYYHQQQCYEDPNAGGCSV 305


>02_03_0252 - 16882960-16884106,16884173-16884518,16892586-16892724
          Length = 543

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = +3

Query: 255 GTST*TYGLVIHCERFT*TSAKVRL 329
           GT+T   GL++H  RFT T+++VR+
Sbjct: 47  GTNTLVLGLIVHPSRFT-TASRVRV 70


>04_03_0051 +
           10199702-10199839,10199869-10200642,10202481-10203077,
           10237046-10237159
          Length = 540

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 223 HKCLEKYDVKPGPVPKHMGWLYTA 294
           H+ L   DV+ G VP    WLY A
Sbjct: 136 HRLLRSADVRGGEVPHMARWLYLA 159


>01_01_0563 + 4142351-4144510,4145610-4147259,4147942-4148185,
            4148280-4148830
          Length = 1534

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -3

Query: 236  SKHLCLGRSQRPKQLAEDLLDFPPPGLQQHAIFM 135
            SKHL  G SQ P+   E+L         QHA+ M
Sbjct: 1451 SKHLLPGASQSPRVDIEELKQRDASSAAQHAVAM 1484


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,018,006
Number of Sequences: 37544
Number of extensions: 261919
Number of successful extensions: 573
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)