Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_I14
         (436 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78415-7|CAH60759.1|  844|Caenorhabditis elegans Hypothetical pr...    27   4.4  
Z78415-5|CAB01670.1|  925|Caenorhabditis elegans Hypothetical pr...    27   4.4  
Z70780-1|CAA94819.1|  336|Caenorhabditis elegans Hypothetical pr...    27   4.4  
U97191-2|AAB52431.1|  214|Caenorhabditis elegans Uncoordinated p...    27   5.9  
AL132948-2|CAC51076.2|  496|Caenorhabditis elegans Hypothetical ...    27   7.8  

>Z78415-7|CAH60759.1|  844|Caenorhabditis elegans Hypothetical
           protein C17G1.4b protein.
          Length = 844

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +1

Query: 160 PGGGKSNKSSASCLGRCDLPRHKCLEKYDVKPGPVPKHMGWLYTANDSP 306
           PGG +    SA  L R D       ++     GP+  HMG +   N +P
Sbjct: 759 PGGSQLPSLSAPSLQRADSMPQLPSQQQPPMGGPMANHMGGMQPMNGTP 807


>Z78415-5|CAB01670.1|  925|Caenorhabditis elegans Hypothetical
           protein C17G1.4a protein.
          Length = 925

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +1

Query: 160 PGGGKSNKSSASCLGRCDLPRHKCLEKYDVKPGPVPKHMGWLYTANDSP 306
           PGG +    SA  L R D       ++     GP+  HMG +   N +P
Sbjct: 759 PGGSQLPSLSAPSLQRADSMPQLPSQQQPPMGGPMANHMGGMQPMNGTP 807


>Z70780-1|CAA94819.1|  336|Caenorhabditis elegans Hypothetical
           protein F46B6.2 protein.
          Length = 336

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 9/30 (30%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = -1

Query: 238 SLSIYAWEDRSALSNLL--RIYWISHRQVY 155
           S  I+ W +R+ + +++    +W+SHR+ Y
Sbjct: 254 SFGIFCWFNRNTVPHMITRHCHWLSHREAY 283


>U97191-2|AAB52431.1|  214|Caenorhabditis elegans Uncoordinated
           protein 108 protein.
          Length = 214

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
 Frame = +2

Query: 266 LNIW--AGY-TLRTIHLNIS*GAAGALVIYPVLCKEESNNIT 382
           L IW  AG  + R+I  +   GAAGAL++Y +  ++  N++T
Sbjct: 57  LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLT 98


>AL132948-2|CAC51076.2|  496|Caenorhabditis elegans Hypothetical
           protein Y39B6A.2 protein.
          Length = 496

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 427 GSSLKDSDYILQLSPSYVVRFF 362
           GS+L+D+D  + + PSYV  F+
Sbjct: 79  GSALEDADNAIAIDPSYVKGFY 100


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,244,570
Number of Sequences: 27780
Number of extensions: 225374
Number of successful extensions: 404
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)