Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_I13
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    28   1.3  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    28   1.3  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    27   1.8  
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    25   7.1  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     25   7.1  

>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -3

Query: 647 FLKLFRL*MIHTECFNIISKHKLS 576
           ++ +F L M+HT+ FN  +KHK++
Sbjct: 453 YILVFSLMMLHTDVFNSNNKHKMT 476


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 162  TKPIHWINLFKNFFRTTPFFLF 97
            T+P+HWI+  + F + T F LF
Sbjct: 1694 TQPLHWISSLEPFLKATLFQLF 1715


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 292 LEFCSKRYHIIDFFYVAAFLMCQFLWFLRPRPP 194
           L  C  R ++ID  ++  F +  + WF  P PP
Sbjct: 898 LTICLARNNLIDNSFLPGFKLFGYQWFPFPEPP 930


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 371 DEHCHVTEIDPKKP 412
           D H HV E+ PK+P
Sbjct: 210 DRHLHVAEVPPKRP 223


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 608 CFNIISKHKLSLFSITFY*LFHCF 537
           CF II   K +L SI    L++CF
Sbjct: 152 CFRIIISQKAALVSIGISTLYYCF 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,536,056
Number of Sequences: 5004
Number of extensions: 50897
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)