Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_I13
         (649 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0291 - 22066550-22067610,22067721-22067975,22068093-220682...    28   5.6  
07_01_0896 - 7508341-7508715,7511746-7511886                           27   9.7  

>09_06_0291 -
           22066550-22067610,22067721-22067975,22068093-22068207,
           22068329-22068381,22068467-22068724,22069110-22069160,
           22069577-22069822,22070427-22070652,22070984-22071100
          Length = 793

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 167 RVPNQSIGLIYLKISSGPPHFFYFLI 90
           RVP   IGL+Y +++SG PH F   I
Sbjct: 545 RVPG--IGLVYTELASGVPHIFSHFI 568


>07_01_0896 - 7508341-7508715,7511746-7511886
          Length = 171

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 456 SFSESHLISGQHSGYGFLGSISVTW 382
           +F  S L  GQH+ YGF+   + TW
Sbjct: 31  AFGSSILTMGQHTEYGFVPVANPTW 55


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,965,238
Number of Sequences: 37544
Number of extensions: 321409
Number of successful extensions: 602
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)