Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_I12
(468 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0216 + 15804110-15804284,15804341-15804351 30 1.1
04_03_0833 + 20147242-20147849,20147937-20148081,20148157-201482... 29 1.9
03_05_0517 - 25118232-25118730,25119002-25119273 28 3.3
03_02_0269 + 7001891-7002212,7003598-7004037 28 3.3
07_03_1727 + 29068348-29068571,29069473-29069514,29069593-290698... 28 4.3
01_01_0401 + 3043634-3043894,3045610-3045849 28 4.3
11_04_0321 - 16359390-16359539,16359674-16359746,16360448-163608... 27 5.7
08_01_0606 - 5321751-5321819,5321950-5322192,5322279-5322377,532... 27 7.5
03_01_0261 - 2007522-2007590,2007684-2007926,2008008-2008106,200... 27 7.5
09_02_0511 - 10079180-10079355,10079656-10079722,10080144-100801... 27 10.0
07_03_0202 + 15131001-15131047,15131488-15131754,15131913-151319... 27 10.0
03_02_0260 - 6924532-6924757,6925443-6925546,6925729-6926007,692... 27 10.0
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 27 10.0
>12_02_0216 + 15804110-15804284,15804341-15804351
Length = 61
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +3
Query: 96 SGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAF 218
SG P+ +H V FF+ SN SGNY + G F
Sbjct: 12 SGSPAPPYKNHTVAGADGWFFNATSNTTSGNYSDWAAGETF 52
>04_03_0833 +
20147242-20147849,20147937-20148081,20148157-20148210,
20148297-20148388,20148957-20149093,20149210-20149464,
20149598-20149771,20149863-20149960
Length = 520
Score = 29.1 bits (62), Expect = 1.9
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +3
Query: 57 WPWLRNRVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPI-STGPAF 218
WPW + +V NS P+ +S +V ++ D QP S + P S+ P F
Sbjct: 162 WPWFKKMEQIVGNSSSPA--SSKALVASDDDNKPRQPQQHSSKRHAPSGSSTPTF 214
>03_05_0517 - 25118232-25118730,25119002-25119273
Length = 256
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +3
Query: 147 DPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRY 257
D FF++ P GN T P VD P P + +
Sbjct: 37 DWFFTRKGESPQGNISKEETAPTGVDVTDPGRPGRAF 73
>03_02_0269 + 7001891-7002212,7003598-7004037
Length = 253
Score = 28.3 bits (60), Expect = 3.3
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 282 SHHGREGCRIAWVDNWDD*NRR 217
+ H R+ R+AW D W D +R+
Sbjct: 62 TEHARQRMRVAWADGWVDGSRK 83
>07_03_1727 +
29068348-29068571,29069473-29069514,29069593-29069839,
29069936-29070013,29070551-29070736,29070829-29071126,
29071775-29072244
Length = 514
Score = 27.9 bits (59), Expect = 4.3
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -2
Query: 113 VRWNTTIVHHVNSVAQPWPYGEEENTKLSLSNSV 12
+ WNT I+ + PY E+E T L++ ++
Sbjct: 344 INWNTGIIPPEEGAREALPYDEQETTNLAVQCAI 377
>01_01_0401 + 3043634-3043894,3045610-3045849
Length = 166
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -1
Query: 153 KDPGSQ*QRGHYCRPMEHHYCPPRELCCAAMAIRRRRKHEAF 28
+D G++ C H++C P LC +RRR H F
Sbjct: 105 EDEGNREHLEVACDLATHYFCHPCALCQEGRELRRRVPHPGF 146
>11_04_0321 -
16359390-16359539,16359674-16359746,16360448-16360845,
16360919-16362673,16362751-16362861,16363745-16363962,
16364088-16364196
Length = 937
Score = 27.5 bits (58), Expect = 5.7
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 240 YPPKRYDNPLARGGK 284
YPPKRY NP+ G+
Sbjct: 859 YPPKRYSNPVGPAGR 873
>08_01_0606 -
5321751-5321819,5321950-5322192,5322279-5322377,
5322463-5322942,5323069-5323167,5323306-5323427,
5323517-5323635,5323734-5323801,5323889-5324074,
5324169-5324244,5324339-5324418,5324505-5324561,
5324980-5325122,5325208-5325352,5325652-5325813,
5325893-5326078,5326263-5326355,5326437-5326597,
5327005-5327109,5328263-5328278
Length = 902
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +3
Query: 39 VFFFAVWPWLRNRVHVVDNSGVPSDGNSDHVVIANPDPFFSQ 164
VFF +WP VV +S +P S + I +P ++Q
Sbjct: 592 VFFRDIWPSTEEIAEVVQSSVLPDMFKSTYEAITKGNPMWNQ 633
>03_01_0261 -
2007522-2007590,2007684-2007926,2008008-2008106,
2008214-2008693,2008806-2008904,2009097-2009218,
2009296-2009414,2009492-2009559,2009832-2010017,
2010323-2010425,2010477-2010556,2010638-2010694,
2010771-2010913,2010988-2011132,2011501-2011662,
2011759-2011944,2012273-2012365,2012893-2013053,
2013440-2013547,2013664-2013928
Length = 995
Score = 27.1 bits (57), Expect = 7.5
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +3
Query: 39 VFFFAVWPWLRNRVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNY--EPIST 206
V+F +WP VV +S +P S + I +P +++ S S Y +P ST
Sbjct: 685 VYFRDIWPSTEEIAEVVKSSVLPDMFKSTYEAITKGNPMWNELSVSASTLYPWDPTST 742
>09_02_0511 -
10079180-10079355,10079656-10079722,10080144-10080181,
10080255-10080336
Length = 120
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 84 VVDNSGVPSDGNSDHVVIANPDPFFSQPSNG 176
+++N+G S GN ++ N PFF SNG
Sbjct: 57 ILNNAGATSKGNYALILPVNEFPFFLVYSNG 87
>07_03_0202 +
15131001-15131047,15131488-15131754,15131913-15131940,
15132120-15132179,15132570-15132696,15132907-15133724
Length = 448
Score = 26.6 bits (56), Expect = 10.0
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Frame = +3
Query: 72 NRVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGP----SGNYEPISTGPAFVDFN 230
NR+HV+D + V I+ PDP +P + P S P + +F +FN
Sbjct: 19 NRLHVLDPPCPSPVAAGEKVSISAPDPISHKPVSRPKVPVSDGNAPNAISKSFFNFN 75
>03_02_0260 -
6924532-6924757,6925443-6925546,6925729-6926007,
6926093-6926368,6926460-6926678,6926758-6926926,
6927208-6927382,6927489-6927600,6929566-6929820
Length = 604
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 84 VVDNSGVPSDGNSDHVVIANPDPFFSQP 167
V++N +P N HVV+ANP P P
Sbjct: 248 VLENCQLPH-ANHGHVVLANPSPILFYP 274
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 26.6 bits (56), Expect = 10.0
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +3
Query: 96 SGVPSD-GNSDHVVIANPDPFF-SQPSNGPSGNYEPIST 206
SG PS GN+ + ++P PF S PS+G SGNY + T
Sbjct: 464 SGSPSHRGNAG--MKSSPSPFAPSGPSSGGSGNYGRLPT 500
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,342,721
Number of Sequences: 37544
Number of extensions: 219363
Number of successful extensions: 577
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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