Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_I11
         (568 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0890 - 28547462-28547545,28548451-28548528,28548641-285488...    28   6.0  

>03_05_0890 - 28547462-28547545,28548451-28548528,28548641-28548814,
            28548902-28548958,28549065-28549116,28549907-28549995,
            28550259-28550344,28550427-28550637,28551790-28551882,
            28551958-28552098,28552175-28552267,28553879-28554113,
            28554263-28554435,28555234-28556571,28556668-28556853,
            28557625-28557713,28557756-28557905,28557951-28558596
          Length = 1324

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
 Frame = -1

Query: 382  INKNANTLSIVKRTYVMNIMIRYNYYIRFLWSFISYARITLASQYLS--SVVSRIAIKMR 209
            I KNA    + +R  +  I +R  + +RF +SF S   + L  +YL+   + S +     
Sbjct: 947  IRKNAVESILAERDIL--ITVRNPFVVRFFYSFTSRENLYLVMEYLNGGDLYSLLRNLGC 1004

Query: 208  VVVDIRRSVWANVVVTLIFI 149
            +  D+ R   A VV+ L ++
Sbjct: 1005 LDEDVARIYLAEVVLALEYL 1024


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,434,681
Number of Sequences: 37544
Number of extensions: 185522
Number of successful extensions: 261
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)