Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_I09
         (639 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28928-12|AAL16320.2|  597|Caenorhabditis elegans Hypothetical p...    29   2.1  
U41510-6|AAK39382.1|  454|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AF098504-1|AAC67412.1|  364|Caenorhabditis elegans Btb and math ...    29   3.7  
AC006630-8|AAK68330.1|  232|Caenorhabditis elegans Hypothetical ...    29   3.7  
Z81556-1|CAB04524.1|  965|Caenorhabditis elegans Hypothetical pr...    28   4.9  
U53149-1|AAD31546.1|  328|Caenorhabditis elegans Prion-like-(q/n...    28   6.5  
Z72517-5|CAA96693.1|  545|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    27   8.6  
U64441-1|AAB06457.1|  549|Caenorhabditis elegans nonsense-mediat...    27   8.6  
U64440-1|AAB06456.1|  549|Caenorhabditis elegans nonsense-mediat...    27   8.6  
AF003141-6|AAK21489.1|  549|Caenorhabditis elegans Suppressor wi...    27   8.6  

>U28928-12|AAL16320.2|  597|Caenorhabditis elegans Hypothetical
           protein C44B7.2a protein.
          Length = 597

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 192 SATILIICSYRTP*SWDHSGGENARNKE 109
           SA  ++  +Y TP  WD SGGE  R +E
Sbjct: 500 SAPFIVKWAYATPRRWDGSGGEPPRYEE 527


>U41510-6|AAK39382.1|  454|Caenorhabditis elegans Hypothetical
           protein ZC449.1 protein.
          Length = 454

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
 Frame = +1

Query: 40  IHSFVFRLPAAPQSAIMNRSLIILLVSCVLAAAMVPRSRRSVTTNNENSSTANIKICAPQ 219
           I++  F LP +P     N  + IL V   L+       RR +TT   +S T  ++ C  Q
Sbjct: 297 IYAEKFCLPESP-FVCQNDEIFILHVQKTLS------KRRRITTKAASSITDCLRKCLEQ 349

Query: 220 TPCAWSVYRPTGRIIDM-NITNNYCECASDSE 312
             C  SVY    +  ++ N+  +  + A DS+
Sbjct: 350 DDCRSSVYISNSKKCELHNVDVSTGDYARDSD 381


>AF098504-1|AAC67412.1|  364|Caenorhabditis elegans Btb and math
           domain containingprotein 25 protein.
          Length = 364

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 63  TGSTAVGNNESKFDNTPCFVRSRRRYGP 146
           T ST   + + KF N  C V   +RYGP
Sbjct: 2   TNSTRKFSLKQKFTNVSCMVNHEKRYGP 29


>AC006630-8|AAK68330.1|  232|Caenorhabditis elegans Hypothetical
           protein F14H12.8 protein.
          Length = 232

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -2

Query: 212 AHILIFAVLLFSLFVVTERLDLGTIAAARTHETRSI 105
           AHI+IF V++  LFV    ++   +  A T + R+I
Sbjct: 118 AHIIIFFVVMIILFVFLSNINSSYVRRATTEKLRNI 153


>Z81556-1|CAB04524.1|  965|Caenorhabditis elegans Hypothetical
           protein F58G1.1 protein.
          Length = 965

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 184 SSTANIKICAPQTPCAWSVYRPTGRIIDMNITNNYCE 294
           SSTA+     P  P AW +    G ++D  +TN  C+
Sbjct: 816 SSTASRHSAMPAAPKAWDLNIAPGILVDSIVTNPACK 852


>U53149-1|AAD31546.1|  328|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 16
           protein.
          Length = 328

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 271 NITNNYCECASDSECQYAEDDSTGVVYRCRPA 366
           N   N C+    S+ Q A+   TG V +C+PA
Sbjct: 269 NSCQNQCQAQQQSQQQCAQACQTGCVAQCQPA 300


>Z72517-5|CAA96693.1|  545|Caenorhabditis elegans Hypothetical
           protein T28F4.2 protein.
          Length = 545

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
 Frame = +1

Query: 175 NENSSTANIKI---CAPQTPCAWSVYRPTGRIIDMNITNNYCECAS 303
           N+ SST NI +   C    PC  S Y PT  +     T+ Y   +S
Sbjct: 350 NQTSSTPNIDLLVECNCNPPCDESTYTPTVSLAQFPSTSYYVATSS 395


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical
           protein F57F4.4 protein.
          Length = 2090

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = +1

Query: 169 TNNENSSTANIKICAPQTPCAWSVYRPTGRIIDMNITNNYCECASDSEC 315
           T N NS  A +  C P + CA    R     ID ++T   C C   +EC
Sbjct: 653 TVNNNSHYATLYTCDPSSACAAMGLRNNCSTIDNSLT--AC-CCDSNEC 698


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
           interacting proteinprotein 1 protein.
          Length = 2153

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = +1

Query: 169 TNNENSSTANIKICAPQTPCAWSVYRPTGRIIDMNITNNYCECASDSEC 315
           T N NS  A +  C P + CA    R     ID ++T   C C   +EC
Sbjct: 653 TVNNNSHYATLYTCDPSSACAAMGLRNNCSTIDNSLT--AC-CCDSNEC 698


>U64441-1|AAB06457.1|  549|Caenorhabditis elegans nonsense-mediated
           mRNA decay proteinprotein.
          Length = 549

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/68 (25%), Positives = 28/68 (41%)
 Frame = -1

Query: 207 YLDICSATILIICSYRTP*SWDHSGGENARNKEYYQTSIHYCRLRCCR*TKYE*MNEIVM 28
           Y+ I S TI   C      SW     E   + +  +   H+ +L     TK+  +N++VM
Sbjct: 272 YITIYSRTISSKCLLAEAISWISDSAEILGHLDEQKNEPHFQKLSVFAKTKWNELNDLVM 331

Query: 27  RKMQGAHT 4
             +    T
Sbjct: 332 NHINSVFT 339


>U64440-1|AAB06456.1|  549|Caenorhabditis elegans nonsense-mediated
           mRNA decay proteinprotein.
          Length = 549

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/68 (25%), Positives = 28/68 (41%)
 Frame = -1

Query: 207 YLDICSATILIICSYRTP*SWDHSGGENARNKEYYQTSIHYCRLRCCR*TKYE*MNEIVM 28
           Y+ I S TI   C      SW     E   + +  +   H+ +L     TK+  +N++VM
Sbjct: 272 YITIYSRTISSKCLLAEAISWISDSAEILGHLDEQKNEPHFQKLSVFAKTKWNELNDLVM 331

Query: 27  RKMQGAHT 4
             +    T
Sbjct: 332 NHINSVFT 339


>AF003141-6|AAK21489.1|  549|Caenorhabditis elegans Suppressor with
           morphological effecton genitalia protein 5 protein.
          Length = 549

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/68 (25%), Positives = 28/68 (41%)
 Frame = -1

Query: 207 YLDICSATILIICSYRTP*SWDHSGGENARNKEYYQTSIHYCRLRCCR*TKYE*MNEIVM 28
           Y+ I S TI   C      SW     E   + +  +   H+ +L     TK+  +N++VM
Sbjct: 272 YITIYSRTISSKCLLAEAISWISDSAEILGHLDEQKNEPHFQKLSVFAKTKWNELNDLVM 331

Query: 27  RKMQGAHT 4
             +    T
Sbjct: 332 NHINSVFT 339


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,996,598
Number of Sequences: 27780
Number of extensions: 323944
Number of successful extensions: 926
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)