Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_I08
         (557 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_1022 - 21778315-21779007                                         29   2.5  
01_01_1121 + 8893177-8893199,8893260-8893287,8893656-8893730,889...    29   2.5  
06_02_0346 - 14837982-14838122,14838208-14838327,14838411-148385...    29   3.3  
03_01_0049 + 418957-419040,419599-419796,419918-420040,420172-42...    29   3.3  
10_01_0354 - 3887790-3890204                                           27   7.7  
02_05_0958 + 33073302-33073442,33073839-33073913,33074382-330744...    27   7.7  

>04_03_1022 - 21778315-21779007
          Length = 230

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = +3

Query: 111 PNGTITYQPRPDPFYQPHKPNQPDHHITPNRTNDLSSVQGGH 236
           P  T    P P P+  PH P+   HH  P      S+  GGH
Sbjct: 71  PPHTPAPAPAPGPYIPPHHPH---HHHPPTPAPAPSTTPGGH 109


>01_01_1121 +
           8893177-8893199,8893260-8893287,8893656-8893730,
           8894748-8894813,8894917-8894959,8895102-8895150,
           8895899-8895992,8896078-8896130,8896921-8897005,
           8897242-8897344,8897421-8897513,8897985-8898051,
           8898309-8898375,8898463-8898516,8898632-8898766
          Length = 344

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 377 GGCPNGLCSGPNLCICNMGY 436
           G CPN  C G   CIC++ Y
Sbjct: 70  GQCPNKECKGKQGCICSISY 89


>06_02_0346 -
           14837982-14838122,14838208-14838327,14838411-14838564,
           14838793-14838866,14838962-14839095,14839207-14839326,
           14843174-14843308,14843842-14843976,14844343-14845003,
           14845103-14845264,14845348-14845510,14880834-14881021
          Length = 728

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +3

Query: 99  MVMLPNGTITYQPRPDPFYQPHKPNQPDHHITPNRTNDLSSVQGGHVN 242
           ++ +  G    QP PDP  QP   +QPD+   P  +      Q  H +
Sbjct: 270 IISIIRGESRTQPPPDPQPQPASHSQPDNQHGPVASQTSEEAQDHHTH 317


>03_01_0049 + 418957-419040,419599-419796,419918-420040,420172-420209,
            420334-420502,421115-424273,424367-424485,424915-425116
          Length = 1363

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 207  NDLSSVQGGHVNGQNTQLSLNVLNRASMEFARK 305
            +DLS+V+  HV+    +  LN + R++ E+ RK
Sbjct: 1196 SDLSAVEASHVHEAELKNELNRIKRSNSEYQRK 1228


>10_01_0354 - 3887790-3890204
          Length = 804

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -3

Query: 264 GKVVCFVR*HGLLGPRTDR 208
           GK++ FV  HGL+G ++DR
Sbjct: 15  GKIILFVSEHGLMGIKSDR 33


>02_05_0958 +
           33073302-33073442,33073839-33073913,33074382-33074497,
           33076863-33076977,33077100-33077228,33078907-33078954,
           33079343-33079469,33079634-33079789,33080031-33080287,
           33080431-33080580,33080660-33080714,33080793-33081088,
           33081252-33081335,33081869-33081941,33082164-33082291,
           33082905-33083090,33083179-33083316,33083394-33083519,
           33083705-33083965
          Length = 886

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 260 KLCVLSVNMASLDRGQIVGAVGGYVMIWLVWFM 162
           KLC L+  M   ++  IV A G   +  +VWFM
Sbjct: 164 KLCQLAQEMGEKEKISIVHAAGLQALSSMVWFM 196


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,086,157
Number of Sequences: 37544
Number of extensions: 379990
Number of successful extensions: 1160
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)