Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_I06
         (513 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0022 - 15536811-15536899,15537485-15537664,15537706-155379...    28   5.1  
07_01_0383 - 2856777-2858042,2858238-2858270,2858607-2858742,286...    27   6.7  

>06_03_0022 -
           15536811-15536899,15537485-15537664,15537706-15537982,
           15538680-15538883,15539431-15539496,15539933-15539953,
           15541622-15541731,15543244-15544236,15544928-15544955,
           15545035-15545093,15545177-15545204,15545453-15545475,
           15545784-15545853,15546980-15547033,15547127-15547169,
           15548126-15548175
          Length = 764

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +1

Query: 16  PVAGAPDSYTTRILSISAQSQCAHRDRRRPV-AITIYPCIGLRS 144
           P     +  +T  L +S + +C    RRR V A  I PCI LR+
Sbjct: 684 PTGSPSEGASTHRLPVSDEQECYPASRRRRVLASPIRPCILLRA 727


>07_01_0383 -
           2856777-2858042,2858238-2858270,2858607-2858742,
           2860778-2860890
          Length = 515

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 88  CARIVTERRLIRFSSYRNPEHR 23
           CA+ VT  R +R SS+++P H+
Sbjct: 103 CAKSVTSMRRVRVSSHQSPVHK 124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,581,456
Number of Sequences: 37544
Number of extensions: 233574
Number of successful extensions: 397
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)