Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_I05
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical ...    33   0.18 
Z37983-3|CAA86056.1|  621|Caenorhabditis elegans Hypothetical pr...    32   0.31 
AC024827-1|AAF60806.2|  581|Caenorhabditis elegans Hypothetical ...    27   8.7  

>AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical
           protein R52.2 protein.
          Length = 1019

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
 Frame = +2

Query: 272 QVQVGGAPLADVLDLAAYCQDVGVDSLLTLPELYFKP-ATVAELVSYVELVANAAPKLPV 448
           +VQ G   +A+  D   +  +    S+LTL  + + P A +A+L        N A + P 
Sbjct: 469 RVQFGTTAIAESQDFPIHSTENSTTSMLTLTSMKYTPDAPIAQL--------NEAEETPQ 520

Query: 449 LYYHIPSMSRVEINMPAFVKEATARISNFKGLKFTSNDLYE 571
           L   +P + + E  +P  +   T  + N KG +   N  ++
Sbjct: 521 LPSDVPMLFQ-ERELPVSMMSTTVNVENIKGEQIPVNVFFD 560


>Z37983-3|CAA86056.1|  621|Caenorhabditis elegans Hypothetical
           protein B0393.3 protein.
          Length = 621

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
 Frame = +2

Query: 134 KFLADNGIKSVLVGGTTGEHMSLAVSDRKKVITEWVKVSKTTGLHIQVQVGGAPLADV-L 310
           KFL D    S    G++ EH+SL+    K + +  +   KT      + + G    D+  
Sbjct: 280 KFLGDLSDLSTSPAGSSIEHLSLSFC--KNIGSNGISKLKTLPNLKSLNLDGVSKRDIST 337

Query: 311 DLAAYCQDVGVDSLLTLPELYFKPATVAELVSYVE 415
            L A  Q   ++ LL   + Y  P T+AE V+  E
Sbjct: 338 GLEAIGQAGRLERLLVSEDTYVNPKTIAEFVNTCE 372


>AC024827-1|AAF60806.2|  581|Caenorhabditis elegans Hypothetical
           protein Y55F3AR.3 protein.
          Length = 581

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
 Frame = +2

Query: 134 KFLADNGIKSVLVGGTTGEHMSLAVSDRKKVITEWVKVSKTTGLHIQVQVGGAPLADV-- 307
           K +ADNG+K V+  G  G+ M L   ++ K++   +  SK     +   VG  P A +  
Sbjct: 314 KAIADNGVKVVVAAGKFGD-MYLHFLNKYKIMAVRL-TSKFDLRRLCRTVGAQPQARICA 371

Query: 308 --LDLAAYCQDVGVDSL 352
             ++L  +C  V V  +
Sbjct: 372 PAVNLLGHCDSVAVQEI 388


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,281,541
Number of Sequences: 27780
Number of extensions: 328406
Number of successful extensions: 820
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)