Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_I03
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.10c |map3||pheromone M-factor receptor |Schizosaccharom...    27   1.5  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    27   1.5  
SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|c...    26   4.7  
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc...    25   6.2  

>SPAC3F10.10c |map3||pheromone M-factor receptor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 304 WFHCTCCDFQLLLMTLMVNLDSNNKILQFVNYTYSN 197
           W  C      L++M +MV L+SN  ++  +N  YS+
Sbjct: 114 WHVCLSILLPLIIMAMMVPLESNRYVVICMNGCYSS 149


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +2

Query: 395 VLCILYYFLIPL-NSVNTTLWIIHSYFT 475
           V C+ Y  LIPL NS N+ + + ++YFT
Sbjct: 687 VFCVFYISLIPLHNSDNSEIVLGNNYFT 714


>SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 135

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 419 ENNTIYIKPKVLFTYILYKKYNKQKKT 339
           +  TI  K KVL ++ LYKK N  + T
Sbjct: 99  KKETIVEKNKVLKSFALYKKINNYRST 125


>SPAC328.08c |||tubulin specific chaperone cofactor C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 482 GSVTYG*IVDKALCVERHRSDIHYNCNLQ 568
           GS+    I D  +CV  H+  +H++ NL+
Sbjct: 181 GSIHLSDINDSTICVSCHQFRLHHSTNLR 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,324,981
Number of Sequences: 5004
Number of extensions: 45045
Number of successful extensions: 113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)