Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_I01
         (412 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1093 - 24271826-24273427                                         27   5.8  
12_02_0221 - 15855479-15855517,15855745-15856033,15856118-158562...    27   7.7  
08_01_1037 - 10536547-10536585,10536814-10537102,10537202-105373...    27   7.7  

>08_02_1093 - 24271826-24273427
          Length = 533

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +3

Query: 54  SGALDTPHGLDARPHRSPQDTDRHVAGAEA 143
           +GA  +    DA PHRS      HVAGA A
Sbjct: 124 TGAFASQSSYDAAPHRSLSYHGFHVAGAAA 153


>12_02_0221 -
           15855479-15855517,15855745-15856033,15856118-15856288,
           15856367-15856572
          Length = 234

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 248 VCHGKYLKYYNK*KTILQFSSQ*HNLYFIVI 156
           VCH   L Y  K KT+ +F +  +  Y IV+
Sbjct: 203 VCHNMRLLYREKVKTLAEFEAMMNTYYAIVM 233


>08_01_1037 -
           10536547-10536585,10536814-10537102,10537202-10537327,
           10537336-10538291,10538379-10538825,10538904-10539632
          Length = 861

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 248 VCHGKYLKYYNK*KTILQFSSQ*HNLYFIVI 156
           VCH   L Y  K KT+ +F +  +  Y IV+
Sbjct: 830 VCHNMRLLYREKVKTLAEFEAMMNTYYAIVM 860


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,121,942
Number of Sequences: 37544
Number of extensions: 150467
Number of successful extensions: 230
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)