Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_H24
         (441 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    30   0.14 
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    29   0.42 
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha...    27   0.97 
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    26   3.0  
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy...    25   3.9  
SPCC1906.01 |mpg1||mannose-1-phosphate guanyltransferase Mpg1|Sc...    25   3.9  
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    25   5.2  
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    25   6.8  
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    24   9.0  

>SPCC191.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 138

 Score = 30.3 bits (65), Expect = 0.14
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +3

Query: 36  SSSPYWPCCRTEFT---WWNMVCIANPDPFFSQPSTVLAEL*THKHWTGVVDQSSQLS 200
           S+  Y+P  +T +T    +N VC ++P+P F+    +  +    KHW G    S++ S
Sbjct: 83  SNDIYFPYFQTRYTTLIMFNTVCSSSPNPVFTLTKVIARK--KGKHWIGSPCHSAESS 138


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 28.7 bits (61), Expect = 0.42
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +1

Query: 94  VLRTRILSSLNHQRS*RNYEPISTGPASSINHP-NYPPS--DTTPSPVVGS 237
           V  T  +SSL H +   +  P  T  A+SIN P NY  S  +  P+P  G+
Sbjct: 64  VQATAPISSLEHFKQLSDISPSFTSSANSINQPYNYSGSLENLVPTPSAGT 114


>SPCC1753.02c |git3||G-protein coupled receptor
           Git3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 27.5 bits (58), Expect = 0.97
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 169 PASSINHPNYPP-SDTTPSPVVGSNVS*DSDFKTRRN 276
           P  S  HPN PP S +TP+ +  S +  + DF+   N
Sbjct: 281 PLLSSVHPNLPPGSQSTPANLNQSGIHFEQDFRDSPN 317


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 61  AEQSSRGGIWCVLRTRILSSLNHQRS*RNY 150
           A QSSR GI   +  R + +LNH R  R Y
Sbjct: 217 AVQSSRNGICRHVDARAMVNLNHSRWERRY 246


>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +1

Query: 10  YSTMKAFVFLLRRIGHAAEQSSRGGIWCVLRTRILSSLNHQR-S*RNYEPISTGPASSIN 186
           Y+T+++FV  L ++   A+  +  G +       LS L+    S  + +P    PA+S +
Sbjct: 204 YTTLESFVKDLNQMFINAKTYNAPGSFVYEDAEKLSQLSSSLISSFSEQPKEHSPATSKH 263

Query: 187 HPNYPPSDTTPS 222
            P   P+  TPS
Sbjct: 264 EPEETPASPTPS 275


>SPCC1906.01 |mpg1||mannose-1-phosphate guanyltransferase
           Mpg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 363

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 41  FAVLAMLPNRVHVVEYGVYCEPGSFLLSTINGPSGIMNP*ALD 169
           + V+   PN   ++E  V  +P  F+ + ING   I+NP  LD
Sbjct: 144 YGVVVHYPNSESLIERFVE-KPVEFVSNRINGGIYILNPSVLD 185


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +2

Query: 227 WWEVMSHKIAILKLGEMMI 283
           WW   S KIA LKL E  I
Sbjct: 232 WWSPDSDKIAFLKLNESEI 250


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -3

Query: 157 WVHNSARTVDG*EKKGSGFAIHTIFHHVNSVRQHGQYGE 41
           ++ ++  ++D  EK  + + +HT+  H +SVR    YG+
Sbjct: 482 YLPDNTNSIDRWEK--NPYFVHTLIGHTDSVRTISGYGD 518


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 47  VLAMLPNRVHVVEYGVYCEPGSFLLSTINGPSGIMNP 157
           ++AM    +  V +  Y   GSF  S IN  SG+  P
Sbjct: 424 LIAMGATNLIGVFFHAYPATGSFSRSAINAKSGVRTP 460


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,631,740
Number of Sequences: 5004
Number of extensions: 29633
Number of successful extensions: 114
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)