Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_H24
         (441 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024211-6|AAF36067.2| 1454|Caenorhabditis elegans Hypothetical ...    28   3.5  
U97192-1|AAB52434.2|  986|Caenorhabditis elegans Hypothetical pr...    27   6.0  
U80445-2|AAB37795.2| 1029|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AC024751-7|AAK21507.2| 1258|Caenorhabditis elegans Hypothetical ...    27   8.0  

>AC024211-6|AAF36067.2| 1454|Caenorhabditis elegans Hypothetical
           protein Y76B12C.7 protein.
          Length = 1454

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +1

Query: 43  RRIGHAAEQSSRGGIW--CVLRTRILSSLNH 129
           +R+GH A QSSRGG     +  TR  SS++H
Sbjct: 744 KRLGHDAIQSSRGGEQSDAIDPTRTFSSISH 774


>U97192-1|AAB52434.2|  986|Caenorhabditis elegans Hypothetical protein
            C01F4.2a protein.
          Length = 986

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
 Frame = +1

Query: 52   GHAAEQSSRGGIWCVLRTRILSSLNHQRS*RNYEPIST--GPASSINHPNYPPSDTTPSP 225
            G    QS R G W    T+  +S +     +++ P  +  GP  S +H +   S TT S 
Sbjct: 799  GKVKVQSQRSGSWPFSLTKTQTSPSRPEG-QHFFPADSQDGPGPSHSHHDPSTSGTTMSA 857

Query: 226  VVGSNVS*DSDFKTRRNDD 282
                     +DF  +  DD
Sbjct: 858  TTTPGPGRKTDFSMKAADD 876


>U80445-2|AAB37795.2| 1029|Caenorhabditis elegans Hypothetical
           protein C50F2.2 protein.
          Length = 1029

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 151 EPISTGPASSINHPNYPPSDTTPSPV 228
           +P  T P  +   P+  P+D TP P+
Sbjct: 381 KPSPTNPTVNFKQPSQKPADLTPKPI 406


>AC024751-7|AAK21507.2| 1258|Caenorhabditis elegans Hypothetical
            protein Y18H1A.3 protein.
          Length = 1258

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 190  PNYPPSDTTPSPVVGS 237
            P+YPPS  +PSPV G+
Sbjct: 955  PDYPPSRGSPSPVDGA 970


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,130,640
Number of Sequences: 27780
Number of extensions: 168515
Number of successful extensions: 593
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)