Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_H20
         (366 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1208 - 28422941-28423139,28423854-28424434,28424705-284250...    27   4.5  
02_01_0623 - 4676847-4676879,4676953-4677115,4677467-4677620,467...    27   6.0  
12_01_0161 - 1215892-1216026,1216393-1216462,1216623-1216786,121...    26   7.9  
09_04_0435 - 17545879-17546605,17546721-17546782,17547123-175473...    26   7.9  

>06_03_1208 -
           28422941-28423139,28423854-28424434,28424705-28425078,
           28425235-28425339,28425902-28425970,28426084-28426156,
           28426395-28426478,28426616-28426648,28426731-28426790,
           28427535-28427627,28427851-28427970,28428804-28428886,
           28428887-28429007,28429114-28429164,28429245-28429333,
           28429429-28429561,28430220-28430354,28430581-28430952,
           28431679-28431796,28431883-28431998,28432131-28432442
          Length = 1106

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 2   KDKIGASATAAHTDFINRNDYSLDGKLNLFKSPD 103
           +D +  +  A  T    R D  +DGKL++ +SPD
Sbjct: 224 EDFVDEAGNAYETACSERRDNDMDGKLHVAESPD 257


>02_01_0623 -
           4676847-4676879,4676953-4677115,4677467-4677620,
           4678413-4678554,4678641-4678706,4679389-4679922
          Length = 363

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 110 VDFNAGFKKFDTPFMKSSW 166
           VDF  G+K  D  FM+S W
Sbjct: 143 VDFEDGYKTMDIKFMESVW 161


>12_01_0161 -
           1215892-1216026,1216393-1216462,1216623-1216786,
           1217856-1217896,1218044-1218136,1218226-1218313,
           1218520-1218573,1218656-1218771,1218964-1219041,
           1219171-1219321,1219399-1219509
          Length = 366

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 195 LESENPKLGSQEDFMKGVSNFLKPALKSTEVSGL 94
           L ++ P   + EDF K VSNF +   +ST  +GL
Sbjct: 142 LANKKPLTCAYEDFEKLVSNFRRMRFESTVGAGL 175


>09_04_0435 -
           17545879-17546605,17546721-17546782,17547123-17547335,
           17547506-17547590,17547904-17548061,17548174-17548294,
           17548765-17548927,17548973-17549097,17550800-17550888,
           17550970-17551636,17552671-17552717,17553506-17553862
          Length = 937

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 160 GLHEGCIELLEAGVEIDRGVRTLEE 86
           G  E C  +L+  VEID  + TLEE
Sbjct: 531 GSSEQCERILDLTVEIDGDINTLEE 555


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,894,401
Number of Sequences: 37544
Number of extensions: 107955
Number of successful extensions: 279
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)