Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_H18
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    51   2e-07
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    33   0.048
SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    29   0.59 
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    29   0.77 
SPCC1682.05c |||signal recognition particle subunit |Schizosacch...    28   1.4  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    27   2.4  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   3.1  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    26   4.1  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    26   5.5  
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    26   5.5  
SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo...    25   9.5  

>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 50.8 bits (116), Expect = 2e-07
 Identities = 23/66 (34%), Positives = 33/66 (50%)
 Frame = -1

Query: 212 NCIDDMCRICHGGERLSLEFGSLISACSCRGTIGRVHVKCLERWLTESGKSRCELCGTRY 33
           N  D++CR+C            L   C C G+I  VH +CL  WL  S K+ CELC  ++
Sbjct: 2   NADDEICRVCRCE---GAPDSPLFHPCKCTGSIRYVHQECLVEWLGHSKKTHCELCKAKF 58

Query: 32  STKRVH 15
              +V+
Sbjct: 59  EFTKVY 64


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 32.7 bits (71), Expect = 0.048
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -1

Query: 194  CRICHGGERLSLEFGSLISAC-SCRGTIGRVHVKCLERWLTESGKSRCELCGTRYS 30
            C IC+    LS+E       C +CR    + H  CL +W   S  SRC LC + ++
Sbjct: 1558 CAICYSV--LSVERTLPNKRCGTCRH---KFHASCLYKWFKSSNSSRCPLCRSSFT 1608


>SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 104 HVKCLERWLTESGKSRCELCGTRY 33
           H  CL  ++T SG +RC  C T Y
Sbjct: 44  HESCLISYITRSGSTRCPQCLTAY 67


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 104 HVKCLERWLTESGKSRCELCGTR 36
           H +C+++WLT S  S C LC T+
Sbjct: 549 HRECIDQWLTSSQNS-CPLCRTK 570


>SPCC1682.05c |||signal recognition particle subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 1/122 (0%)
 Frame = -1

Query: 650 SEIVTFCESATSVMTVKKQSTTTVNKDVTASSSNINLFTIKLIDNETVPMIPSKESVITH 471
           ++I T  E   SV+  + Q+    N    A  + +   T K +D   +  IP  E VI H
Sbjct: 206 NKIDTLAEHEKSVLG-ELQNQIDSNLRYVAQRTGLQNQT-KSLDILMLSSIPKDEEVIQH 263

Query: 470 IEN-PIKTNDMVQXXXXXXXXXXXRHPREHRVKVRSPRRRVAVYVNNNKTQTIGTIAIDW 294
           + +   +   M                R+ RVK+  P   +A+Y  ++   + GTI    
Sbjct: 264 VNSVDSEILQMTGDEQDSLQTITVIEWRDQRVKIEHPDVVLALYAIHDVKNSPGTIDSKR 323

Query: 293 DR 288
           DR
Sbjct: 324 DR 325


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 644 IVTFCESATSVMTVKKQSTTTVNKDVTASSSNIN 543
           + ++ ES  + + + K  T T+NK V  S  N+N
Sbjct: 456 VKSYFESVDNPLDIPKPLTNTINKFVNQSKDNLN 489


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 104 HVKCLERWLTESGKSRCELC 45
           H  C+++WLT +G + C LC
Sbjct: 790 HQACIDQWLT-TGNNSCPLC 808


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/50 (24%), Positives = 23/50 (46%)
 Frame = -1

Query: 626 SATSVMTVKKQSTTTVNKDVTASSSNINLFTIKLIDNETVPMIPSKESVI 477
           S+  +  V  + ++ VN +        + F     +N T+P +P  ESV+
Sbjct: 269 SSIPIEPVSSRQSSVVNNNSVQQPVAYHAFVQSPTENGTLPQLPKNESVV 318


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = +1

Query: 454  FIGFSMWVITDSLDGIIGTVSLSINLI 534
            FI  +++ ITDS+  + GT+S S+++I
Sbjct: 2806 FIKKAVFGITDSISKVTGTISRSLSVI 2832


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/42 (23%), Positives = 23/42 (54%)
 Frame = +1

Query: 40  VPQSSHLDLPDSVSQRSRHFT*TLPIVPRHEHADIKDPNSSD 165
           +P+  HL++PD+V+ +++H        P  ++ +  +  S D
Sbjct: 476 LPELEHLEIPDNVALQNKHAIHITDCCPNLKYVNFSNSISLD 517


>SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -1

Query: 104 HVKCLERWLTESGKSRCELCGTRYSTKRVHRY 9
           H    ER +++ G     +C  +YS  R H Y
Sbjct: 278 HASPFEREVSQGGSLALAVCNAQYSFPRKHPY 309


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,598,832
Number of Sequences: 5004
Number of extensions: 53783
Number of successful extensions: 155
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)