Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_H16
(663 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 31 0.15
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|... 29 0.79
SPCC737.06c |||glutamate-cysteine ligase regulatory subunit |Sch... 27 1.8
SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc... 27 2.4
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 27 3.2
SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyce... 27 3.2
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 27 3.2
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 26 4.2
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 4.2
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 26 5.6
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo... 26 5.6
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.6
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo... 25 9.7
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 25 9.7
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 31.1 bits (67), Expect = 0.15
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 333 QRSGSVRTILTMIGSTSLDSFTISERLWPSTRSRNGAWSVTH 458
Q S T + S + S T+S WP+T +GAWS T+
Sbjct: 40 QNSERFSTASRSVKSGLISSSTVSAWTWPATLLSSGAWSYTY 81
>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 28.7 bits (61), Expect = 0.79
Identities = 29/120 (24%), Positives = 52/120 (43%)
Frame = +2
Query: 20 PESPVSVMDPSLLLRPEEKYEDKPLEAFRDYTVDENDPIKMRVRKTYYDMHTNMTVDFVK 199
P SP + +P + E + K + F +Y+V++ D + R RK + + V+
Sbjct: 197 PISPNNAQEPKFSVLDE--WTKKMVANFEEYSVEDVDKRRERNRK----LSEPLLVNGRY 250
Query: 200 GKMDNWLKFNHFKSTIKDALIKLNDLVDESDPDTNLPNIVHAFQTAERIREDHPDDDWFH 379
D W +F KS I+ + DE LP+ +H+ + E + + +D FH
Sbjct: 251 RVRDRWAQFR--KSEIEKPY-RFTFFTDE------LPSTIHSHEMWELVHDGQSFEDLFH 301
>SPCC737.06c |||glutamate-cysteine ligase regulatory subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 287
Score = 27.5 bits (58), Expect = 1.8
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
Frame = +2
Query: 2 ENMK--IKPESPVSVMDPSLLLRPEEKYEDKPLEAFRDYTVDENDPIKMR---VRKTYYD 166
EN+K IK PV+ P L +E+YE F D EN IK R + + +Y+
Sbjct: 54 ENLKKNIKVLVPVNEK-PQKLDGKQEEYEIIVKLFFLD---GENIDIKKREETLSQVFYN 109
Query: 167 MHTNMTVDFVKGKMDNWLKFNHFKSTIKDALIKLNDLVDESDP 295
+H +DFV + ++ K + + ++ D +DE P
Sbjct: 110 LHMLFGIDFVSTLVVSFPHITFLKESGNSSSNEIYDSIDEIPP 152
>SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -3
Query: 121 IHRVITERFQRFVLVFLLWSE*KRRVHNGHRGFWF 17
IH++I++R Q+F FL W E + V+ + G +F
Sbjct: 35 IHQLISQRNQKFQANFLEW-ENSKLVYRRYAGLYF 68
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/46 (23%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +2
Query: 56 LLRPE-EKYEDKPLEAFRDYTVDENDPIKMRVRKTYYDMHTNMTVD 190
+++P+ +K++ + LEA ++ ++++ M + ++ +M TNM +D
Sbjct: 674 VVKPKRKKHKKQRLEAGEEFDSEDDNSDDMDIEESEEEMDTNMVID 719
>SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 318
Score = 26.6 bits (56), Expect = 3.2
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +2
Query: 5 NMKIKPESPVSVMDPSLLLRPEEKYEDKPLEAFRDYTVDENDPIKMRVR 151
N KI P SV+DP+ + E+ + R VD+N P+ R R
Sbjct: 149 NEKITPSMYDSVVDPAPPMPDHEQDVKSEVAKLRSEIVDQNLPLFYRYR 197
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 26.6 bits (56), Expect = 3.2
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +3
Query: 102 SVITRWMKTIRSRCESVKPIMICTR 176
+VIT+W+ + S C VK +++ +
Sbjct: 102 NVITKWLPEVSSNCPGVKLVLVALK 126
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 212 NWLKFNHFKSTIKDALIKLNDLVDESD 292
N LKF H ST+ D + +D VD D
Sbjct: 609 NLLKFVHLVSTVDDLQVVEDDAVDRHD 635
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.2 bits (55), Expect = 4.2
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +2
Query: 176 NMTVDFVKGKMDNWLKFNHFKSTIKDALIKLNDLVDESDPDTNLPNIVHAFQTAERIRE 352
NM + +VK K D W HF I+ VD++ NL + + AE+ R+
Sbjct: 760 NMILRYVKSKADWWTSVAHFNR----ERIRRGATVDKTVAKKNLGRLTRLWLKAEQERQ 814
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = -3
Query: 418 GHNLSEIVNESNEVEPIIVRMVLTDPLRCLESVHNVRQVS 299
G++LSE +N N + + ++ DP+R +H + S
Sbjct: 936 GNHLSEKLNSDNHIPKALQKLDSADPIRKPSLLHTSKSYS 975
>SPAC6G10.07 |||nuclear cap-binding complex large subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 780
Score = 25.8 bits (54), Expect = 5.6
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = -3
Query: 442 APLRLLVEGHNLSEIVNESNEVEPIIVRMVLTDPLRCL--ESVHNV 311
A LR V S ++NE+NE + I+ ++L+ LR L E+ N+
Sbjct: 666 ARLRRSVSNKEDSSLINEANEEKEIVTNLLLS-ALRALISENAENI 710
>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 391
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/46 (21%), Positives = 21/46 (45%)
Frame = +2
Query: 2 ENMKIKPESPVSVMDPSLLLRPEEKYEDKPLEAFRDYTVDENDPIK 139
++ K+ P + +D L P +Y+ P + DY +P++
Sbjct: 148 DSQKLSPGKEKNTLDLKHCLLPSPEYKAPPAKKPEDYEASPGEPVE 193
>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +2
Query: 2 ENMKIKPESPVSVMDPSLLLRPEEKYEDKPLEAFRDYT 115
E + PE P+S+ + +L + YE +E + YT
Sbjct: 606 EQGDVIPEKPMSIKERMNMLMTKTDYEKPKVEGYGRYT 643
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 25.0 bits (52), Expect = 9.7
Identities = 19/83 (22%), Positives = 34/83 (40%)
Frame = +2
Query: 2 ENMKIKPESPVSVMDPSLLLRPEEKYEDKPLEAFRDYTVDENDPIKMRVRKTYYDMHTNM 181
+N+ P P + PS +RP D P + D ++ T + ++
Sbjct: 394 KNINFTPLPPSTPSKPSTFVRPHSSSTDSPPSPSTPSNT-QTDSYFIQRENTPTNHNSIP 452
Query: 182 TVDFVKGKMDNWLKFNHFKSTIK 250
T+ K MD +L+F+ S +K
Sbjct: 453 TIQLEKSSMD-FLRFDPPPSAVK 474
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,901,684
Number of Sequences: 5004
Number of extensions: 62697
Number of successful extensions: 200
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -