Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_H13
(316 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 26 1.5
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch... 25 2.0
SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||... 25 2.7
SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr 2... 25 2.7
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce... 25 3.6
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 25 3.6
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 25 3.6
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 24 4.7
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste... 24 4.7
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 24 6.3
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom... 23 8.3
SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 23 8.3
SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 23 8.3
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 23 8.3
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo... 23 8.3
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 25.8 bits (54), Expect = 1.5
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 106 IGVLAGAGYRSITAQVNPKVALMSTGNELQEPSEV 210
+GVL G R+ + +VA ++ N L+ PS++
Sbjct: 840 VGVLLGTSIRTNASDCTLEVAYLNPQNNLKRPSDL 874
>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 25.4 bits (53), Expect = 2.0
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -3
Query: 113 TPILAASSISPLLTSIVPM-GISKP 42
TP S ++PLL++I+P G SKP
Sbjct: 93 TPSSCLSLLNPLLSNIIPFYGASKP 117
>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 525
Score = 25.0 bits (52), Expect = 2.7
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Frame = -2
Query: 129 ASACQYANFSR---IKYFTFVNEYS 64
++ C + FSR +K+FTFV YS
Sbjct: 337 SAICDWLKFSRYHYLKFFTFVEAYS 361
>SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 338
Score = 25.0 bits (52), Expect = 2.7
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -2
Query: 159 GIDLSGNGPVASACQYANFSRIKYFTFVNEYSSHG 55
GI LSG GP A NF I + ++ + HG
Sbjct: 285 GICLSGAGPTVLALATGNFDEIAH-AMLSIFEKHG 318
>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 747
Score = 24.6 bits (51), Expect = 3.6
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +2
Query: 176 QQAMNFKNRQRSSCAQHIYETRIE 247
+Q N+ NR+ S A+ +Y+T I+
Sbjct: 496 EQLSNYSNREISDLAKDVYKTLIQ 519
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2244
Score = 24.6 bits (51), Expect = 3.6
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 154 NPKVALMSTGNELQEPSEVKL 216
N K ALMS ELQ PS+ +L
Sbjct: 871 NVKDALMSIDTELQTPSDQRL 891
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 24.6 bits (51), Expect = 3.6
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = -2
Query: 138 GPVASACQYANFSRIKYFTFVNEYSSHGNIKANRSHILTLTVEQSP 1
G + SA +A + IK T + NIK NR+ L E P
Sbjct: 494 GLIKSASSFAFYRHIKVGTTAAVSGNLENIKVNRNDFLNALSEVRP 539
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 24.2 bits (50), Expect = 4.7
Identities = 13/57 (22%), Positives = 24/57 (42%)
Frame = +1
Query: 28 DVRPVGFDIPMGTILVNKGEILDAAKIGVLAGAGYRSITAQVNPKVALMSTGNELQE 198
D +GF IL+ ++ G+ YR I ++NPK+ + ++ E
Sbjct: 665 DRERIGFSNKRAAILLRGANVIGMTTTGLNK---YRDILERINPKICFIEEAADVLE 718
>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 24.2 bits (50), Expect = 4.7
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 111 RIGRRWLPVHYRSSQ 155
R G+RWL V Y +SQ
Sbjct: 138 RYGKRWLSVDYSASQ 152
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 23.8 bits (49), Expect = 6.3
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -3
Query: 212 LTSDGS*SSLPVDISATLGLT*AVMDR*PAPANTPILAASSISPLL 75
+ S+ S SS ++ + T M P PAN P+ + S + PL+
Sbjct: 198 INSEPSNSSFSYEVQPSNYTTFCRMLDEPLPANNPVQSNSRLVPLM 243
>SPAC31G5.15 |||phosphatidylserine decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 980
Score = 23.4 bits (48), Expect = 8.3
Identities = 13/54 (24%), Positives = 25/54 (46%)
Frame = +1
Query: 46 FDIPMGTILVNKGEILDAAKIGVLAGAGYRSITAQVNPKVALMSTGNELQEPSE 207
+D+ + +K + D+ +G + +AQV+P+ L S E PS+
Sbjct: 346 YDLVFKVVDHDKMSLNDSIAVGSFNVQSIINSSAQVDPETGLYSFNIETSSPSQ 399
>SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 148
Score = 23.4 bits (48), Expect = 8.3
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -2
Query: 192 KFIAC*HQCHFGIDLS-GNGPVASACQYANFSR 97
K I C H+C F +DL+ G V AC A R
Sbjct: 50 KTIPCLHRCAF-LDLTKSRGRVVHACSRAALPR 81
>SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 237
Score = 23.4 bits (48), Expect = 8.3
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +3
Query: 117 GRRWLPVHYRSSQSQS 164
GRR L +HY S SQS
Sbjct: 168 GRRGLGIHYNHSGSQS 183
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 23.4 bits (48), Expect = 8.3
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = +2
Query: 41 LALIFPWELYSLTKVKYLMRLKLAYWQALATGPL 142
LA ++P + ++K+ +L ++ W +L PL
Sbjct: 1904 LACLYPLRIRPVSKLGFLWSNQIVDWHSLNKSPL 1937
>SPBC1604.04 |||thiamine pyrophosphate
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 23.4 bits (48), Expect = 8.3
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 67 ILVNKGEILDAAKIGVLAGAGYRSITAQVNPKVALMST 180
+L G L + GV+AGAG ++I V+ V + T
Sbjct: 185 VLSPLGLALSSTLSGVIAGAGSKAIMFPVDTVVKTLQT 222
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,292,132
Number of Sequences: 5004
Number of extensions: 24379
Number of successful extensions: 83
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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