Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_H13
(316 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1465 + 33794225-33794389,33794471-33794597,33794669-337947... 82 8e-17
09_06_0317 - 22265786-22267618,22267874-22268446,22268546-222686... 29 1.0
09_02_0627 + 11359055-11359560,11359647-11359698 27 2.3
03_02_0342 - 7645323-7645909,7646323-7646491 27 2.3
10_06_0184 - 11577331-11577360,11577616-11577722,11578048-115781... 27 4.1
09_04_0495 - 18068188-18068610 26 5.4
08_01_0601 - 5268520-5271112,5272448-5272950 26 5.4
08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,452... 26 5.4
03_06_0166 - 32112140-32112877,32112888-32112977 26 7.1
11_06_0440 - 23567567-23567952,23568192-23569875,23583064-23584215 25 9.4
10_08_0424 - 17803984-17805270 25 9.4
03_06_0278 - 32817707-32819167 25 9.4
>04_04_1465 +
33794225-33794389,33794471-33794597,33794669-33794799,
33795153-33795254,33795337-33795420,33795504-33795731,
33795934-33796038,33796376-33796731,33797146-33797303,
33797399-33797505,33797852-33798061
Length = 590
Score = 82.2 bits (194), Expect = 8e-17
Identities = 41/98 (41%), Positives = 58/98 (59%)
Frame = +1
Query: 22 GQDVRPVGFDIPMGTILVNKGEILDAAKIGVLAGAGYRSITAQVNPKVALMSTGNELQEP 201
GQD+R VG DI ++++ E + A+IG+LA G ++ P +A+ STG+EL EP
Sbjct: 135 GQDIRNVGCDIQKDSVVLKSSEHIGPAEIGLLATVGVTTVKVYRRPTIAVFSTGDELVEP 194
Query: 202 SEVKLRPAHIRDSNRTMLKALLREHGYDSIDCGIARDT 315
+ L IRDSNR ML A +H +D GIA+DT
Sbjct: 195 ATASLSRGQIRDSNRAMLIAAAIQHKCKVVDLGIAKDT 232
>09_06_0317 -
22265786-22267618,22267874-22268446,22268546-22268677,
22268931-22269137,22269287-22269388,22270742-22271032
Length = 1045
Score = 28.7 bits (61), Expect = 1.0
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -3
Query: 122 PANTPILAASSISPLLTSIVPMGISKP-TGRTS 27
PA+ P + A ++S +TS VP+G+S GR+S
Sbjct: 494 PADRPTIYAGTLSTSITSSVPVGLSAAYAGRSS 526
>09_02_0627 + 11359055-11359560,11359647-11359698
Length = 185
Score = 27.5 bits (58), Expect = 2.3
Identities = 22/64 (34%), Positives = 33/64 (51%)
Frame = +1
Query: 31 VRPVGFDIPMGTILVNKGEILDAAKIGVLAGAGYRSITAQVNPKVALMSTGNELQEPSEV 210
V+PV FD+ +G K + DAA I A A ++T + V L+ TG+ S +
Sbjct: 78 VKPVKFDLNIGLDFWYKVTVSDAA-IPYTAEA--IAVTVASSLSVCLLDTGHGTPFISSL 134
Query: 211 KLRP 222
+LRP
Sbjct: 135 ELRP 138
>03_02_0342 - 7645323-7645909,7646323-7646491
Length = 251
Score = 27.5 bits (58), Expect = 2.3
Identities = 17/70 (24%), Positives = 27/70 (38%)
Frame = +1
Query: 43 GFDIPMGTILVNKGEILDAAKIGVLAGAGYRSITAQVNPKVALMSTGNELQEPSEVKLRP 222
GF IP+ L+ LD L A Q P++A GN+ + P
Sbjct: 85 GFSIPLAADLLRDDGELDKDCFAQLHSAPETPCAGQTPPRIAKAGPGNDTIAAAAADAAP 144
Query: 223 AHIRDSNRTM 252
++ S+ T+
Sbjct: 145 TYLAVSDDTL 154
>10_06_0184 -
11577331-11577360,11577616-11577722,11578048-11578126,
11578213-11578299,11580935-11581207,11581298-11581447,
11582186-11582785
Length = 441
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = +2
Query: 110 AYWQALATGPLPLKSIPKWH*CQQAMN---FKNRQRSSCAQ 223
A+W L G +PL ++ WH C A + F R+R + A+
Sbjct: 9 AWWLGLVAGAVPLLALAVWH-CTDAFHSAAFAFRRRGTRAR 48
>09_04_0495 - 18068188-18068610
Length = 140
Score = 26.2 bits (55), Expect = 5.4
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 154 NPKVALMSTGNELQEPSEVKLRPAHIRDSNRTMLKALLRE-HGYDSIDCGIAR 309
N + A S + ++ SE++ + H+RD+NR +L L + G + C AR
Sbjct: 54 NRESARRSRMRKQRQLSELRGQVVHLRDANRRLLDELNQAMRGCSDVHCENAR 106
>08_01_0601 - 5268520-5271112,5272448-5272950
Length = 1031
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 14 TVRVKMCDLLALIFPWELYSLTKVKYLMRLKLAYWQA 124
T+ V D+ AL PW L+ ++++M +LA W A
Sbjct: 712 TLDVSRTDVEAL--PWRLWRNPSLRHVMARRLAAWSA 746
>08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,
4521632-4521723,4522226-4522342,4522641-4522704,
4523175-4523228,4523579-4523666,4523788-4524023,
4525258-4525478,4525634-4525827,4525938-4525995,
4526771-4526824,4526851-4527473,4527580-4527640,
4528417-4528590,4528803-4529063,4529201-4529320,
4529388-4530022,4530062-4530828,4530915-4531012,
4531101-4531155,4531230-4531318
Length = 2010
Score = 26.2 bits (55), Expect = 5.4
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -2
Query: 171 QCHFGIDLSGNGPVASACQYANFSRIKYFTFVNEYSSHGNIKANRSH 31
QC GI V QY +K + V+++ S+GNI N H
Sbjct: 958 QCCRGIACDPRPQVDLIAQYEQKDYLKKRSEVHQFDSNGNIVINGQH 1004
>03_06_0166 - 32112140-32112877,32112888-32112977
Length = 275
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = -2
Query: 168 CHFGIDLSGNG-PVASACQYANFSRIKYF 85
C+FG S N + C YA F R KYF
Sbjct: 216 CYFGASRSANECGLEKDCVYAIFVRYKYF 244
>11_06_0440 - 23567567-23567952,23568192-23569875,23583064-23584215
Length = 1073
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 71 SLTKVKYLMRLKLAYWQALATGPLPLKSI 157
S+TK+ YL L LAY T P L +I
Sbjct: 347 SITKIPYLQELDLAYNNLTGTVPPSLYTI 375
>10_08_0424 - 17803984-17805270
Length = 428
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 140 MDR*PAPANTPILAASSISPLL 75
+D P PA+TP AS+ SP+L
Sbjct: 29 VDHPPPPASTPTTPASTRSPIL 50
>03_06_0278 - 32817707-32819167
Length = 486
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +2
Query: 56 PWELYSLTKVKYLMRLKLAYWQALATGPLPLKS 154
PWE Y + +AYW LA G L K+
Sbjct: 252 PWEQYGFSADSVFTLNGIAYWVDLALGVLYCKT 284
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,471,933
Number of Sequences: 37544
Number of extensions: 163800
Number of successful extensions: 445
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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