Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_H11
         (133 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    23   5.5  
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    23   7.3  
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    22   9.7  

>SPAC6C3.06c |||P-type ATPase, calcium
            transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 67   FCLSLKFFDIGNLLLLDSVLP 129
            F L LKF+ +  L+L  S+LP
Sbjct: 992  FLLGLKFYWVSALILFISLLP 1012


>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 359

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 131 KGRTESSRRRFPMSKNFKLRQKLK 60
           +  T+ S +R+P+S NF  R + K
Sbjct: 209 RSSTQLSDQRYPLSSNFDHRGEAK 232


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 128 GRTESSRRRFPMSKNFKLRQKLK 60
           G    S RR P + + K  +KLK
Sbjct: 397 GHNPPSARRLPSASSVKFNEKLK 419


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 352,870
Number of Sequences: 5004
Number of extensions: 2732
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 2,362,478
effective HSP length: 24
effective length of database: 2,242,382
effective search space used: 42605258
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)