Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_H09
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi...    29   0.66 
SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces pomb...    28   1.2  
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces...    27   2.0  
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c...    27   2.0  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    27   2.0  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    26   3.5  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    26   4.7  
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha...    25   8.1  

>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 28.7 bits (61), Expect = 0.66
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
 Frame = +1

Query: 130 SGLNKTNTAFAFSSMN-----TSVSTIKSTMIEVPPNAESCKQGTY 252
           SG+N TN+  + S MN     TS+S +  T       A SCK   Y
Sbjct: 78  SGMNMTNSTTSMSGMNMSNSTTSMSGMNMTNTTTTAKASSCKLSMY 123



 Score = 26.2 bits (55), Expect = 3.5
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 121 SSDSGLNKTNTAFAFSSMNTSVSTIKSTMIEVPPNAESCKQGTYLDNT 264
           +S SG+N TN+    S MN + ST   + + +  N+ +   G  + NT
Sbjct: 63  TSMSGMNMTNSTTPMSGMNMTNSTTSMSGMNM-SNSTTSMSGMNMTNT 109


>SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 9/41 (21%), Positives = 26/41 (63%)
 Frame = +1

Query: 136 LNKTNTAFAFSSMNTSVSTIKSTMIEVPPNAESCKQGTYLD 258
           L+ +  ++A  ++++  S++ S++I+     +SC + TY++
Sbjct: 269 LDPSYQSYAAKTIHSDTSSLASSIIQTGDGTQSCDESTYIE 309


>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 662

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 324 PASAWNNMHQSITTWYPAYSCVIQ 253
           P++ W NM + + TW   +S V+Q
Sbjct: 46  PSTFWGNMARDMMTWDKQFSTVVQ 69


>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 489

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 289 NHMVSCILLCYPSMYLA 239
           N + SCIL C P +YLA
Sbjct: 28  NFIASCILFCCPGIYLA 44


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +1

Query: 100 KDFKETFSSDSGLNKTNTAFAFSSMNTSV--STIKSTMIEVPPNAESCKQGTYLDNTG 267
           K FKE +   S   K NT  A  +  +    S IKS  +E P +A + K    +DN G
Sbjct: 540 KSFKEVYGKFSA-EKQNTDLAEDAKISEKLDSIIKSKELETPTSATTSKLMAPMDNIG 596


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
 Frame = +1

Query: 19  IVFNLFICAYTAPFSVQDILDVFGSPIKDFKETFSSDSGL-NKTNTAF-AFSSMNTSVST 192
           IV  L +CA  APF++  + D+F   +K         SGL N+ +T +     +  S+S 
Sbjct: 75  IVELLRLCAPDAPFTLSQLEDIFQVILKIL-------SGLMNQESTYYPQIYEILESLSN 127

Query: 193 IKSTMIEVP-PNAE 231
           +KS ++ V  PNAE
Sbjct: 128 VKSAVLIVDLPNAE 141


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 338 FHDKISMSITTTTESNLLSGQVIRVPELE 424
           FHD +S S+T   +    SG+++R P L+
Sbjct: 610 FHDFLSKSLTVNPKQRPSSGELLRHPFLK 638


>SPCC1753.02c |git3||G-protein coupled receptor
           Git3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -3

Query: 206 IVLLIVLTD--VFIELNANAVLVLFNPLSDENVSLKSF 99
           +++L+ +TD  +FI +  NA+LVLF  +  E   L  F
Sbjct: 105 LLVLVRMTDYWIFINILHNALLVLFPHVDTERRGLYRF 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,184,648
Number of Sequences: 5004
Number of extensions: 40195
Number of successful extensions: 142
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)