Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_H09
         (586 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0465 + 25427065-25427113,25428099-25428227,25428387-254284...    29   2.7  
01_05_0708 + 24477228-24477375,24477823-24477905,24478233-244783...    28   4.8  
08_02_0042 - 11542707-11542730,11542936-11543011,11543316-115434...    28   6.3  
06_03_1496 - 30567968-30568210,30568345-30568513,30568635-305687...    28   6.3  
10_08_0537 - 18625440-18626804                                         27   8.3  

>04_04_0465 +
           25427065-25427113,25428099-25428227,25428387-25428479,
           25428681-25428953,25429037-25429288,25429735-25430118,
           25430243-25430483,25431986-25432736
          Length = 723

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 121 SSDSGLNKTNTAFAFSSMNTSVSTIKSTMIEVPPNAES 234
           S+ S   KT    +FSSM +S ++  ST+   PP  ++
Sbjct: 257 SNSSATRKTGMRSSFSSMTSSTASFVSTIATCPPTVKT 294


>01_05_0708 +
           24477228-24477375,24477823-24477905,24478233-24478391,
           24478882-24478992,24479098-24479164,24479269-24479537
          Length = 278

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
 Frame = +2

Query: 275 GYHVVMLWCMLFQAEAGVAFNFHDKISMSITTTTESNLLSGQVIRVP---ELECPL--GQ 439
           G +  +L    F A  GVA NFH  I  +  +TT  NLL+     VP    L  PL  G+
Sbjct: 50  GQYANLLRAQAF-ASRGVALNFHQLIRNAGISTTR-NLLAADDAMVPVSSPLTPPLGDGE 107

Query: 440 RRDSLGNCRNRL*RQ*TQQENECKKIKINQI 532
           + D  G    RL  Q  +++ +    K+N +
Sbjct: 108 QTDKKGAIVKRLKVQAIKKDIKQSPKKVNLV 138


>08_02_0042 -
           11542707-11542730,11542936-11543011,11543316-11543425,
           11544562-11544747,11545421-11547697
          Length = 890

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 324 PASAWNNMHQSITTW 280
           PA+ W+N HQ  +TW
Sbjct: 844 PATCWHNSHQEFSTW 858


>06_03_1496 - 30567968-30568210,30568345-30568513,30568635-30568736,
            30569087-30571855,30572402-30572430,30572546-30572659,
            30572735-30572846,30574730-30574845,30574928-30575068,
            30575121-30575243,30575346-30575478,30575842-30575972,
            30576065-30576300,30577073-30577376
          Length = 1573

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 37   IC-AYTAPFSVQDILDVFGSPIKDFKETFSSDS 132
            +C AY A   V+D+  + G P+ DF++  SS S
Sbjct: 1205 VCDAYRAQQRVEDVQVIIGRPLADFEQFISSAS 1237


>10_08_0537 - 18625440-18626804
          Length = 454

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 22  VFNLFICAYTAPFSVQDILDVF 87
           VFN+ ICAYT    V +++ VF
Sbjct: 184 VFNILICAYTKQEKVDEVVLVF 205


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,504,796
Number of Sequences: 37544
Number of extensions: 239083
Number of successful extensions: 666
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)